Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  208 bits (530), Expect = 1e-58
 Identities = 105/322 (32%), Positives = 187/322 (58%), Gaps = 18/322 (5%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS----ERPLPPEVMANINAKYGLD 56
           +L+  A R+ +A+  +L ++ ++F L+  APG+P  +       + PE+MA +  +YGLD
Sbjct: 6   LLRHAASRLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLD 65

Query: 57  KPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVG 116
           K +  Q   YL  + QGD G S+ + +  V ++I   LP ++ + L++ +     G  +G
Sbjct: 66  KSLPVQLAVYLGKVAQGDLGYSYFF-NLPVTQMIGERLPATLLLVLSSVLLAFFAGTALG 124

Query: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD------GG 170
            +++ K N W+   I   +++G   P F L  +L+ + A  F + P  G +       GG
Sbjct: 125 VLSSRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRSIDSTGAGG 184

Query: 171 F-------EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKH 223
           F       +++ LP L +SL+Y+A ++R+ R SM++ L S+FIRTARAKGL+   ++ KH
Sbjct: 185 FADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYKH 244

Query: 224 ALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIG 283
           AL+ ALLPVV+ +G  F  ++ G++++ET+F  PG+G+L   +   RDY  ++GV +   
Sbjct: 245 ALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFSS 304

Query: 284 FLFILFNAIVDILLAYIDPKIR 305
            + ++ N + D+   +IDP+I+
Sbjct: 305 IVVVVMNQLTDLCYRFIDPRIK 326