Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  192 bits (488), Expect = 9e-54
 Identities = 107/314 (34%), Positives = 177/314 (56%), Gaps = 11/314 (3%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           + ++IA R    +  + ++  + F L R A G+P S    ++    ++ A +  +YGLDK
Sbjct: 5   LFRYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADI-ARVQKEYGLDK 63

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  Q+  +L  ++QG+ G S   +      L   + P ++ + L A     ++GV  G 
Sbjct: 64  PLPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTL-LALMAVAIAALIGVPCGI 122

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGW--QDGGF---- 171
           ++A+ +   +D      AMLG  +PSF L  VLI IFA+ F  FP  G+   D  F    
Sbjct: 123 VSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERL 182

Query: 172 EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLP 231
             + LP   + LL  A   R TR SM++ L  +++RTAR+KGLS   +V+KHAL+ AL+P
Sbjct: 183 HSLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVP 242

Query: 232 VVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNA 291
           +V+ +G     +I G+V+ ET+FGLPG+G L V+A   RDY ++ G  ++I  +++L N 
Sbjct: 243 IVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINF 302

Query: 292 IVDILLAYIDPKIR 305
            +D+L A +DP+++
Sbjct: 303 SIDLLYAVVDPRVK 316