Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  199 bits (506), Expect = 7e-56
 Identities = 105/314 (33%), Positives = 182/314 (57%), Gaps = 9/314 (2%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS--SERPLPPEVMANINAKYGLDKP 58
           ML F+ KR+   +P +LV+    F ++R  PG+P +         E +  I  + GL +P
Sbjct: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIGGNSATNEDLDRIRVQLGLTRP 60

Query: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTI 118
           + EQ+  +   ++ GD G SF + +  V ELI   +  ++ +     +  V + + +GT+
Sbjct: 61  LWEQFAIWCNGVLHGDLGFSF-FLNKPVTELIGQRMEPTLSLAGGTLLLAVAIALPLGTL 119

Query: 119 AALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQ---DG---GFE 172
           AA +   W+D  +M+ ++ G  +P FV+  VLIY+ A++   FP  G++   DG      
Sbjct: 120 AAWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGVGPWLH 179

Query: 173 YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPV 232
            + LP L +++ YVA  +R+TR ++ E L  +FIRTARAKG++   ++  HAL+ A +PV
Sbjct: 180 QLVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHALRNAAVPV 239

Query: 233 VSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAI 292
           V+ +G +   ++ G VV ET+F +PG+G+L V+A  NRD+ ++ GV +    +++  N +
Sbjct: 240 VTVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAVVYVAVNLL 299

Query: 293 VDILLAYIDPKIRY 306
           VD+   +IDP+IRY
Sbjct: 300 VDLSYLFIDPRIRY 313