Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  186 bits (473), Expect = 5e-52
 Identities = 100/311 (32%), Positives = 177/311 (56%), Gaps = 10/311 (3%)

Query: 4   FIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS--SERPLPPEVMANINAKYGLDKPVSE 61
           +I +R    +P M V+  + F L+  +PG+P +  +      E +  + A  GL+ P+ +
Sbjct: 3   YIVRRFLSTLPVMAVVAVVVFLLIHLSPGDPAALIAGDLATTEDIEKLRATLGLNLPLWQ 62

Query: 62  QYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAAL 121
           Q+  +L  +  GD G S  +    V +L+   L  +V I     + T+++ V +GT+AA 
Sbjct: 63  QFTLWLGKLFTGDLGTSI-FTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTLAAY 121

Query: 122 KQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGW---QDGGFEYM---A 175
           +  +WID  +M  A+L   +P F++  +L+Y FAIQ   FP  G+    DG  E++    
Sbjct: 122 RAGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGEWLRSLV 181

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           LP + ++L+Y+A   R+TR +++E L+ ++IRTARAKGL     V+ HAL+ A +P+ + 
Sbjct: 182 LPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGV-LPVLGHALRNAAIPIATT 240

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
           +G     +I G VV ET+F +PG+G+L +++    DY ++  V +L   +++L N ++D+
Sbjct: 241 IGAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGVYVLINLLIDL 300

Query: 296 LLAYIDPKIRY 306
                DP+I+Y
Sbjct: 301 SYRLFDPRIQY 311