Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., ABC transporter permease subunit from Variovorax sp. OAS795

 Score =  204 bits (519), Expect = 2e-57
 Identities = 113/336 (33%), Positives = 185/336 (55%), Gaps = 34/336 (10%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS---ERPLPPEVMANINAKYGLDK 57
           ML+F+  R+   +PT + +  ++FFL+R  PG+P  +   ER + P   A +   YG DK
Sbjct: 1   MLRFLLTRVSLLVPTFIGMTLLAFFLIRMVPGDPIETMAGERGIDPARHAQLRTAYGFDK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           PV  QY  Y+  ++ GD G S   ++   NE +A   P +V++G+ A +F +++G+  G 
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSLITQESVANEFLA-LFPATVELGVCAILFALLLGLPAGI 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           IAA+++N+  D+ +M+T++ G  MP F    +LI  F++Q    P  G            
Sbjct: 120 IAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYFVEPRT 179

Query: 166 ----------------WQDGGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTA 209
                           W      ++ LP + +  + +A  AR+TR +M+E L  ++IRTA
Sbjct: 180 GFLLVDALRAGEVDAFWS--ALHHLVLPAIVLGTVPLAVIARMTRSAMLEVLGEDYIRTA 237

Query: 210 RAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFN 269
           RAKGLS   +V  HAL+ AL+PVV+ +G     + TG+++ ETIF  PG+GK  + A   
Sbjct: 238 RAKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGR 297

Query: 270 RDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIR 305
           RDY ++ G  +L+G + +L N +VD+    I+P+IR
Sbjct: 298 RDYPVLQGGMLLLGGIVMLVNLLVDVTYGIINPRIR 333