Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  197 bits (501), Expect = 3e-55
 Identities = 116/335 (34%), Positives = 181/335 (54%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           ML FIA+R+   IPT   +  ++F L+R  PG+P      ER + PE+ A    + GL+K
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  QYL Y+  + QGD G S + ++    E + +  P ++++  AA +F  ++G+  G 
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFL-TLFPATLELAFAALLFAGVVGLLAGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGW----------- 166
           IAALK+ +  D+ +M  ++ G  MP F    +LI  F++     P  G            
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKT 179

Query: 167 -----------QDGGFE----YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                      ++G F+    ++ LP + +  + +A  AR+TR SM+E L  ++IRTARA
Sbjct: 180 GFMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  H L+ AL+PV++  G     ++ G+V+ ETIF  PGIGK  + A   RD
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y +V    +LI  L IL N +VDIL    +P+IR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGLANPRIRH 334