Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  199 bits (506), Expect = 8e-56
 Identities = 111/338 (32%), Positives = 191/338 (56%), Gaps = 33/338 (9%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDK 57
           ML+FI +R+   IPT + +  ++F  +   PG+P    + ER + PE  A + A+ GLDK
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+ +QYL Y+  ++ GD G S K +    +E +      ++++G+ A +F V +G+ VG 
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPR-FKATLELGVCAMIFAVAVGIPVGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           +AA+K+ +  D+T +  A+ G  MP F    +LI + ++ ++L P  G            
Sbjct: 120 LAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTN 179

Query: 166 ------------W-QDGGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRT 208
                       W ++G F     +M LP + +  + +A   R+TR SM+E L  ++IRT
Sbjct: 180 PLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

Query: 209 ARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAF 268
           ARAKGL+   +++ HAL+ A+LPVV+ +G     ++ G+++ ETIF  PG+G+  ++A  
Sbjct: 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQ 299

Query: 269 NRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
            RDY +V G  +L+  + IL N +VD+L   ++P+IR+
Sbjct: 300 RRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337