Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

 Score =  199 bits (506), Expect = 8e-56
 Identities = 112/338 (33%), Positives = 189/338 (55%), Gaps = 33/338 (9%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDK 57
           ML+FI +R+   IPT + +  ++F  +   PG+P    + ER + PE  A + A+ GLDK
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+ +QYL Y+  ++ GD G S K +   V E        ++++G+ A +F   +G+ VG 
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISMKSR-IPVWEEFVPRFQATLELGVCAMIFATAVGIPVGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           +AA+K+ +  D+T +  A+ G  MP F    +LI + ++ ++L P  G            
Sbjct: 120 LAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSN 179

Query: 166 ------------W-QDGGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRT 208
                       W +DG F     +M LP + +  + +A   R+TR SM+E L  ++IRT
Sbjct: 180 PLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

Query: 209 ARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAF 268
           ARAKGL+   +++ HAL+ A+LPVV+ +G     ++ G+++ ETIF  PG+G+  ++A  
Sbjct: 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQ 299

Query: 269 NRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
            RDY +V G  +L+  + IL N +VD+L   ++P+IR+
Sbjct: 300 RRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337