Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  213 bits (542), Expect = 5e-60
 Identities = 113/315 (35%), Positives = 187/315 (59%), Gaps = 13/315 (4%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPF----SSERPLPPEVMANINAKYGLD 56
           ML+ I KR+  A+PT+L++  + F L +  PG+P       ER   P V+A + A+  LD
Sbjct: 1   MLELICKRLLLAVPTLLLVSMMVFGLQKLLPGDPLIAMAGEERD--PAVIAQLRAELNLD 58

Query: 57  KPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVG 116
            P+  QY  +LT  +QGD G S +  +  V +LIAS LPV++++ L A +  ++ G+++G
Sbjct: 59  APIPVQYFHWLTRALQGDLGVSLRTHE-PVTQLIASKLPVTLELSLLAMIIALVFGISMG 117

Query: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD------GG 170
            +AA+ +N+W+D+     A+ G+ +P F L  +LI +F++     PA G+          
Sbjct: 118 ILAAVNKNSWVDHGANFVAISGISIPHFWLGILLILVFSVNLQWLPASGYVPFSEDPIQN 177

Query: 171 FEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALL 230
              + LP   +     AT  R TR SMI  L +++IRTARAKGL    +++KHA + AL+
Sbjct: 178 LRTLLLPASVLGTGLAATLMRHTRASMIAVLKADYIRTARAKGLLPKAVILKHAFRNALV 237

Query: 231 PVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFN 290
           PV++     F  ++ G+V+ E +F +PG GK+ V++ FNRDY++V GV +++   F++ N
Sbjct: 238 PVITLTTLLFGELLGGAVLTEQVFTIPGFGKMIVDSVFNRDYAVVQGVVLIVAIGFLMLN 297

Query: 291 AIVDILLAYIDPKIR 305
            + D+L   I+PK+R
Sbjct: 298 LLADVLYVLINPKMR 312