Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB from Azospirillum sp. SherDot2

 Score =  194 bits (492), Expect = 3e-54
 Identities = 108/335 (32%), Positives = 186/335 (55%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           ML+FI  R+   IPT L +  ++F L+R  PG+P      ER + P+ +A +  + GLD+
Sbjct: 1   MLRFILTRVSLVIPTFLGITFLTFILIRLVPGDPIEVRVGERGIAPDRLAALRHELGLDQ 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
            + +Q+L Y+ N++ GDFG S    +  ++E + +  P ++++ L A +F  ++G+  G 
Sbjct: 61  SLWQQFLDYVGNVLSGDFGLSLVTHNSVLSEFV-TLFPATLELALCAMLFATLVGLPAGI 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD--------- 168
           +AA+K+ +  D+ +M  ++ G  MP F    +LI  F++     P  G  D         
Sbjct: 120 LAAVKRGSLFDHGVMGASLTGYSMPIFWWGLLLILFFSVALGWTPVSGRLDLVYYVEPVT 179

Query: 169 ----------GGFE-------YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                     G +E       ++ LP + +  + +A  AR+TR +M+E L  ++IRTARA
Sbjct: 180 GFMLIDTLMAGDYEAFRSALSHLILPTIVLGTVPLAVVARMTRSAMLEVLGEDYIRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGL+ G ++  HAL+ AL+PVV+ +G     ++ G+++ ETIF  PG+GK  + +   RD
Sbjct: 240 KGLASGRVIGMHALRNALIPVVTVIGLQVGTLLGGAILTETIFSWPGVGKWLIESINRRD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y  + G  +LI    IL N +VD+L   ++P+IR+
Sbjct: 300 YPALQGGVLLIATSVILVNLLVDVLYGVLNPRIRH 334