Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  191 bits (486), Expect = 1e-53
 Identities = 103/307 (33%), Positives = 177/307 (57%), Gaps = 6/307 (1%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYA--PGNPFSSERPLPPEVMANINAKYGLDKP 58
           M+ FI  R+  AI  M++ +T  F ++R    P      E   P E +A     +GLD+ 
Sbjct: 1   MISFILARLVRAIIVMMLTVTFVFIILRLGGDPARAMLGENATP-EALAAFRTAWGLDRS 59

Query: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTI 118
           + EQ+L YL + ++GDFG S       V  +I+  +P ++ + ++AFV ++++G+  G I
Sbjct: 60  IPEQFLIYLASALRGDFGVSAA-DGREVFTVISERIPKTLTLTISAFVLSILVGIPAGII 118

Query: 119 AALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMALPV 178
           AA+++++  D ++M+ A+LG  +P+F+L   LI++FA+ F + P+ G     +++  LPV
Sbjct: 119 AAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSG--SSTWQHAILPV 176

Query: 179 LGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGP 238
               L+  A  AR  R ++IE L   +I  ARA G+    +V++HAL  A +P+V+ +G 
Sbjct: 177 ATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGF 236

Query: 239 AFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLA 298
              G++ GS ++ET+F  PG+G  FV A    D ++V  + +L     +  N IVD+L A
Sbjct: 237 VAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYA 296

Query: 299 YIDPKIR 305
            ++PKIR
Sbjct: 297 VLNPKIR 303