Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  197 bits (501), Expect = 3e-55
 Identities = 105/316 (33%), Positives = 183/316 (57%), Gaps = 17/316 (5%)

Query: 5   IAKRIFEAIPTMLVLITISFFLMRYAPGNPF----SSERPLPPEVMANINAKYGLDKPVS 60
           + + + +A+PTM V++T+ FF+++ APG+      +       E +A+I   +GLD P+ 
Sbjct: 16  LLRNLIQAVPTMFVIVTLGFFVLQLAPGDAADYMAAESGAATQETVADIRRAFGLDLPLL 75

Query: 61  EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA 120
           +Q   Y T++     G S +Y    V +LI   LP ++ + + A V  +++G+  GTI A
Sbjct: 76  DQLANYYTSLAHFSLGISPRY-GVPVADLIMERLPGTLTLMVLAIVIALLVGIAAGTIMA 134

Query: 121 LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQ-----DGGF---- 171
           L      D  +   ++L   +P+F +  + I +F+++    PAGG +      GGF    
Sbjct: 135 LNATRAADRILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGASSGGFGWLI 194

Query: 172 ---EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPA 228
               Y  LP   ++L Y+A +AR+TR S++E +  + +RTA+AKGL+   +V++H L+ A
Sbjct: 195 DRVSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGLAPRQVVLRHVLRNA 254

Query: 229 LLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFIL 288
           L+P+ +  G    GI+ G++VIET+F  PG+G+L  +A   R+Y+L++G+ ++   L I 
Sbjct: 255 LIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTLLLGIMLVSSVLVIC 314

Query: 289 FNAIVDILLAYIDPKI 304
            NAIVDI+ A +DP+I
Sbjct: 315 VNAIVDIIQAALDPRI 330