Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  215 bits (548), Expect = 9e-61
 Identities = 116/312 (37%), Positives = 184/312 (58%), Gaps = 13/312 (4%)

Query: 4   FIAKRIFEAIPTMLVLITISFFLMRYAPGNPF----SSERPLPPEVMANINAKYGLDKPV 59
           +I KR+  AIPT+L++    F L +  PG+P       ER   P  +  +  KY L+ PV
Sbjct: 4   YIGKRLLVAIPTLLIISIFVFSLQKLLPGDPVLAMAGEERD--PATIEFLREKYRLNDPV 61

Query: 60  SEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIA 119
             QYL +L  +V GDFG S +  +  V ELI   LPV++++ + A  F +++G+ +G +A
Sbjct: 62  PLQYLNWLGGVVTGDFGISLR-TNQPVLELIGQKLPVTIQLAVMAMFFAMVIGIPIGILA 120

Query: 120 ALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD------GGFEY 173
           A+K+NTWIDYT    A+ G+ +P+F L  +LI + +++    PA G++          E 
Sbjct: 121 AVKKNTWIDYTANIVALSGLSIPNFWLGIMLILLVSVKLGWLPASGYESIFVDPVRSIET 180

Query: 174 MALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVV 233
           M +P   +     AT  R TR +M+  L+S++IRTARAKGLS   I++ H+ + ALLPV+
Sbjct: 181 MIMPAFVLGNALAATLMRHTRSAMVAVLSSDYIRTARAKGLSPREIILSHSFRNALLPVI 240

Query: 234 SYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIV 293
           + +   F  ++ G+V+ E IF +PG GK+ V+A F RDY++V G+ +     FIL N + 
Sbjct: 241 TLLALLFGELLAGAVLTEQIFTIPGFGKMTVDAVFTRDYAVVQGIVLCTAVGFILMNLLA 300

Query: 294 DILLAYIDPKIR 305
           DI    ++P++R
Sbjct: 301 DIAYVLLNPRLR 312