Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  191 bits (486), Expect = 2e-53
 Identities = 110/335 (32%), Positives = 184/335 (54%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDK 57
           M++FI  ++   +PT L +  ++F  +R  PG+P    + ER + PE  A +  + G  +
Sbjct: 1   MIRFIFGKLLYLVPTFLGITIVAFAFVRVLPGDPVLLMAGERGISPERHAQLAEQLGFAQ 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+ EQYL +L  ++QGD G S   K   + E +A   P +V++GL A +   ++GV VG 
Sbjct: 61  PIWEQYLHFLGRLLQGDLGNSLVTKKPVLTEFLA-LFPATVELGLVAIIIATVIGVPVGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           IAA+++ +W D   M+TA++G  MP F    +LI +F+      P  G            
Sbjct: 120 IAAIRRGSWFDQISMTTALVGFSMPIFWWGLLLIIMFSGILQWTPVSGRISLMYFFPSVT 179

Query: 166 ----------WQDGGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                      Q G F     ++ LP + ++ + +A  AR TR +M+E L  +++RTARA
Sbjct: 180 GFMLIDSLISGQKGAFASALSHLILPSVVLATIPLAVIARQTRSAMLEVLGEDYVRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KG+S   +V  HAL+ A++PV++ +G     ++ G+++ ETIF  PGIGK  +++   RD
Sbjct: 240 KGMSASRVVGIHALRNAMIPVITTIGLQIGVLMAGAILTETIFSWPGIGKWMIDSISRRD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y +V    +LI  L ++ N +VD+    I+P+IR+
Sbjct: 300 YPVVQSGLLLIAGLVMVVNLLVDLTYGLINPRIRH 334