Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  190 bits (483), Expect = 3e-53
 Identities = 98/304 (32%), Positives = 175/304 (57%), Gaps = 13/304 (4%)

Query: 13  IPTMLVLITISFFLMRYAPGNPFSSERPLPPEV----MANINAKYGLDKPVSEQYLTYLT 68
           I  M +++TI F ++R  PG+P +    L P+     +A +  + GLD+ +  QY+ Y+ 
Sbjct: 2   IVVMFLVVTIVFVILRVTPGDPAAVM--LGPDATAQDIAELRTRLGLDQSLGVQYVYYIG 59

Query: 69  NIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWID 128
            +++GD G S  + +  V   +      +  + + + +   ++ + +G  AA ++ +++D
Sbjct: 60  QLLKGDLGQSI-FLNMPVGSALLDRAEPTFFLTIFSLLIAGVIALPIGIYAAYRRGSFVD 118

Query: 129 YTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYM------ALPVLGMS 182
               + AML   +PSF L  +L+  FA++  LFP  G+   G  ++       LP + + 
Sbjct: 119 QAATTIAMLAASIPSFWLGLILMQFFAVRLDLFPVSGYGGPGASFLERMYHLTLPAIALG 178

Query: 183 LLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVG 242
           L+  A   R TR SM++ L  +++RTARAKG+    +V+KHALK AL+P+++ +G     
Sbjct: 179 LVSSALILRFTRASMLDVLGDDYVRTARAKGVKERRVVMKHALKNALIPILTVLGLTAAV 238

Query: 243 IITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDP 302
           +I+G+VV ET+FGLPG+G L V+A   RDY ++ G  ++I  L++L N  +D+L   +DP
Sbjct: 239 LISGAVVTETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAGLYVLINFAIDMLYLLVDP 298

Query: 303 KIRY 306
           ++RY
Sbjct: 299 RVRY 302