Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  131 bits (330), Expect = 6e-35
 Identities = 125/508 (24%), Positives = 217/508 (42%), Gaps = 55/508 (10%)

Query: 43  VRGNGTEVASLDPHKTEGVPESN----VIRDLLEGLVNQDANGNVVPGVAESWETT-DNK 97
           VRG       +   +T G+  SN    +  ++ +GLV  D  G   P +AES+E   D +
Sbjct: 31  VRGGHLVSIVVPEPQTLGLTVSNPTIVIAINVYDGLVTYDGTGAPRPQLAESYEQAPDGR 90

Query: 98  TFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKD 157
           + TF +RK   W +G P TA D  YS    V          Y +   ++           
Sbjct: 91  SITFRLRKGVTWHDGVPFTAADVKYSILEVVKKTHPRGIGTYSQLQDIETP--------- 141

Query: 158 KSTLGAKAVDDHTLVFELETAVP--YFVMMMGHTTVKPIHKAT-VEKFGDQW-TKPENFV 213
                    DDHT++  L    P  +  +    T + P H     +   + W TKP   +
Sbjct: 142 ---------DDHTVILRLAKPSPVIWSALNSSETQILPKHLYEGTDPLTNPWNTKP---I 189

Query: 214 GNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQIT-- 271
           G G ++  +WV    + L+RNP YWD     L+++T+  + +  A      +GE Q    
Sbjct: 190 GTGPFIFKEWVRGSHVTLERNPNYWDAGKPYLDRLTFRFVPDAGARAAALETGEAQYVPL 249

Query: 272 NELPLEHFKRLKKEHPESVQVQGQLC---TYYYGFNNKKPPFDDVRVRKALSYAIDRDVV 328
           + +PL   +RL K     V+ +G       ++  FN ++P F DVRVR+A++ AID+  +
Sbjct: 250 SPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRRAIALAIDKKAL 309

Query: 329 SDAILGQGQKPAYFLTPEITAGFSPE-MPAYGKMTQKERIAEAKKLLEEAGYNKSNPLKF 387
           +  +     +PA    P     F+   +P Y    +K     A+ LL+EAG  K  P   
Sbjct: 310 ARTVWYGFAEPATGPVPAFQTAFAATGLPQYDYDPKK-----AEALLDEAGL-KRGPDGV 363

Query: 388 TLLYN-----TSENHKKIATAIQSMWKTSLGVDIALENQEWKTYL-DTRRQGNFDVTRAG 441
            L +N       ++ K+    I+   K  +G+++ L N +  T+L     + +FD   A 
Sbjct: 364 RLRFNHVSIPYGDDFKRSGEFIRQQLK-KVGIEVELLNYDLPTFLRKIYTEYDFDTLNAY 422

Query: 442 WCGDYNEASSF------LTLMLSSNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADA 495
           +    +            T+   S  SN   Y + + DA++E A      ++R+ L  + 
Sbjct: 423 YAAFADPQIGVQRRFWSQTIRPGSAWSNASGYSNPKVDALLEAAAVEPDPQKRKALLGEF 482

Query: 496 EKLLARDMPIAPIYQYVRSRLVSPTVGG 523
           + ++  ++P   + +  + R+ S  + G
Sbjct: 483 QLIVQTELPSISLLELKQFRVWSSRLKG 510