Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  129 bits (324), Expect = 3e-34
 Identities = 133/535 (24%), Positives = 231/535 (43%), Gaps = 68/535 (12%)

Query: 25  SFAANVPAGT--KLAPVQELVRGNGTEVASLDPHKTEGVPESN-------VIRDLLEGLV 75
           +F   +PA    +  P +   +  GT V  + P  T      N       V  ++ +GLV
Sbjct: 14  AFIGLLPAAVLAQTVPSEGTPKRGGTLVTIIQPEPTVLTTTVNNQFSNGAVSVNIYDGLV 73

Query: 76  NQDANGNVVPGVAESWETTDNK-TFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATAS 134
             D N  + P +AESWE + +K T TFH+R   KW +G P T+ D  +S           
Sbjct: 74  AYDDNLGLKPALAESWEISPDKLTITFHLRHGVKWHDGAPFTSADVRFSALEI------- 126

Query: 135 PYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVMMM------GH 188
                  + K+ +   +   E +      +  D +T +F      P  V++       G 
Sbjct: 127 -------WKKVHSRGRLTFAELED----VETPDAYTAIFRFRA--PSLVVLSALNAWEGQ 173

Query: 189 TTVKPIHKATVEKFGDQWTKPENF--VGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLN 246
              K +++ T     D    P N   VG G +    W   E +EL RN  YWD     L+
Sbjct: 174 VLPKHLYENT-----DILKNPHNVEPVGTGPFKFKSWTKGEAIELVRNADYWDAGKPYLD 228

Query: 247 KVTYLPIENQVAEMNRFLSGEIQIT--NELPLEHFKRLKKEHPESVQVQGQLCT---YYY 301
           +V Y  I +  A       G++     + +P    +R++K     V+ +G       Y+ 
Sbjct: 229 RVIYRFIPDGGARAAAIEIGDVGYAAFDPVPFADIERVRKLPNLKVESRGYEWNAKYYFL 288

Query: 302 GFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGF-SPEMPAYGK 360
            FN + P   D+RVR+A ++AIDR  ++D +      PA    P  T  F + ++P Y  
Sbjct: 289 EFNLRNPILADIRVRRAFAHAIDRQGLADTVWFGLVAPATGPIPSFTKAFYTADVPTYAF 348

Query: 361 MTQKERIAEAKKLLEEAGYNK-SNPLKFTL---LYNTSENHKKIATAIQSMWKTSLGVDI 416
             +     EA++LL+EAGY + +N ++F++       +EN +K A  I+   K  +GV++
Sbjct: 349 DPK-----EAERLLDEAGYKRGANGVRFSINQDFQPFNENFRKTAEYIRQNLK-RVGVEV 402

Query: 417 ALENQEWKTYLDTRRQGNFDV-TRAGWCGDYNEASSFLTLMLSSNT-------SNDPQYH 468
            + +Q+   ++  R  G++D     G    + +    L     S +       +N   Y 
Sbjct: 403 NVRSQDLGAFV-RRVYGSYDFDINTGQFSVFIDPELGLLRQFWSKSIAPGIPWTNASGYA 461

Query: 469 SAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGG 523
               D VIE  K++   E+R  L+ + ++ + RD+P+ P+ +  +  + +  V G
Sbjct: 462 DPGTDKVIEGIKSAADPEQRVALFHELQRRVQRDLPVLPLLELKQFTVYNTNVRG 516