Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  136 bits (343), Expect = 2e-36
 Identities = 127/486 (26%), Positives = 202/486 (41%), Gaps = 69/486 (14%)

Query: 42  LVRGNGTEVASLDPHKTEGVPESNVIR-DLLEGLVNQDANGNVVPGVAESWETT-DNKTF 99
           LV G   E   LDP    G   + V+   + E L   +++G V P +AESWE + D KT+
Sbjct: 33  LVIGLTLEPTGLDPTAKAGAEIAEVVLYTVFETLTKINSDGGVTPLLAESWEVSPDLKTY 92

Query: 100 TFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKS 159
           TF +R+  K+ NG+P  A    +SF RA    + +                     KDK 
Sbjct: 93  TFKLRRGVKFQNGEPFNAQSVKFSFDRAAAANSTN---------------------KDKR 131

Query: 160 T---LGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNG 216
           T   +  + VD+HT+V   +   P  + ++G  +   +   +VE      TKP   VG G
Sbjct: 132 TFTNIATQVVDEHTVVLINKEIEPDLLFLLGQASAILVEPKSVETNA---TKP---VGTG 185

Query: 217 AYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELPL 276
            Y LD W     + L +   +       + K T+  I    A+    LS +I +     +
Sbjct: 186 PYRLDNWAKGSSIVLAKWDGWRGADTVQIRKATFRFISEPAAQTAALLSNDIDLFPHASV 245

Query: 277 EH-FKRLKKEHPESVQVQGQLCTYYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQ 335
                + + +    +     L       NNK+ P DDVRVR+A+S AIDR  V DA +  
Sbjct: 246 SRSLSQFQNDKRFQIVFNASLGKTILAINNKRKPLDDVRVRRAISAAIDRKAVIDAAVDG 305

Query: 336 GQKPAYFLTPEITAGFSPEMPAYGKMT--QKERIAEAKKLLEEAGYNKSNPLKFTLLYNT 393
              P       I + + P +P Y   T      I +AKKLL EAG     PL+  L+   
Sbjct: 306 RGVP-------IGSHYVPGLPGYVDTTGVNPYNIEKAKKLLAEAGV--KTPLELELVLPP 356

Query: 394 SENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFL 453
               ++    I +     +G+   ++N EW  ++                G Y   +  L
Sbjct: 357 PPYARQGGELIAAQ-LAKIGIVAKIQNVEWAQWIS---------------GTYGNKNYDL 400

Query: 454 TLMLSSN-----TSNDPQYH----SAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMP 504
           +L+L            P+Y+    SA ++   +KA+ +    +R +   DA++LLA D  
Sbjct: 401 SLILHVEPFDLVNYTKPEYYWGYQSARFNEAFDKARNAARPADRLRYLGDAQRLLAEDAA 460

Query: 505 IAPIYQ 510
              ++Q
Sbjct: 461 NVFLFQ 466