Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  152 bits (384), Expect = 3e-41
 Identities = 147/532 (27%), Positives = 222/532 (41%), Gaps = 62/532 (11%)

Query: 21  TSFTSFAANVPAGTKLAPVQE-----LVRGNGTEVASLDPHKTEGVPESNVIR-DLLEGL 74
           T  T+  A V   T LA + +     +V G   E   LDP        + V++ ++LE L
Sbjct: 6   TLLTTAGATVALATPLAGMAQGRKDAIVIGMALEPPGLDPTSGAAAAIAEVVQYNILETL 65

Query: 75  VNQDANGNVVPGVAESWETT-DNKTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATA 133
              +A+G+V P +A+SWE + D KT+TF +++  K+ NG+P  A    +SF RA    + 
Sbjct: 66  TKINADGSVTPLLADSWEVSPDLKTYTFKLKRGVKYQNGEPFNAAAVKFSFDRAGSEKST 125

Query: 134 SPYSWYMEYTKMKNAKEIIAGEKDKST---LGAKAVDDHTLVFELETAVPYFVMMMGHTT 190
           +                     KDK T   L  + VDD+T+V   +   P    ++G  T
Sbjct: 126 N---------------------KDKRTFANLSTQVVDDYTVVVINKEIDPDLPFVLGQAT 164

Query: 191 VKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTY 250
              +   + E      TKP   VG G Y LD W     + L +   +       +NKVT+
Sbjct: 165 AVIVEPKSAE---GNATKP---VGTGPYKLDNWAKGSSITLSKWEGFRSPATAKINKVTF 218

Query: 251 LPIENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQVQGQLCTYYYGFNNKKPPF 310
             I +  A+    LSG+I +   +      + K      V + G         NN+K P 
Sbjct: 219 RFISDTAAQAAAVLSGDIDVFPRIGTRVVPQFKMNPQFQVILAGSRAKTILSINNRKKPL 278

Query: 311 DDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMT--QKERIA 368
           DDVRVR+A+  AIDR  V +        P       I + + P    Y   T      I 
Sbjct: 279 DDVRVRRAILAAIDRKAVIEGAADGFGVP-------IGSHYVPGAAGYVDTTGINPFDIE 331

Query: 369 EAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLD 428
           +AKKLL EAG      LK TL       + +    +       +G+ + ++N EW  +L 
Sbjct: 332 KAKKLLAEAGVKTPLELKMTL---PPPPYARQGGEVIVAELAKIGIVVKVQNVEWAQWL- 387

Query: 429 TRRQGNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQ--YHSAEYDAVIEKAKTSTSEE 486
           +   GN D        D +  S      L +   +D    Y S  +D + +K KT+ +  
Sbjct: 388 SGTYGNKDY-------DLSIVSHVEPFDLGNYAKSDYYWGYQSKAFDTLFDKIKTTANTA 440

Query: 487 ERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDL 538
           ER KL  DA+K+LA D     +YQ     +    V G      E+ I+  DL
Sbjct: 441 ERNKLLGDAQKMLATDAANGFLYQPQFPTVAKKNVKGIWK---ENPIFVNDL 489