Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  150 bits (378), Expect = 1e-40
 Identities = 123/499 (24%), Positives = 211/499 (42%), Gaps = 49/499 (9%)

Query: 37  APVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVVPGVAESWETTDN 96
           A  Q L  G    V+S+DP       + ++     + ++N    G + P +A SW+  D+
Sbjct: 19  ASAQTLSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGKLEPALASSWKALDD 78

Query: 97  KTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVD-PATASPYSWYMEYTKMKNAKEIIAGE 155
           KT+ F +R D KW +G P +A D V+SFQR+ + P + + YS  +   +   AK      
Sbjct: 79  KTWEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVASYSGALRTVESVTAK------ 132

Query: 156 KDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGN 215
                      D  TL+ +  T  P   + +    +   H     K  D +      VG 
Sbjct: 133 -----------DPATLIVKTNTPNPMLPLEIASIYIVSKHVGEKSKTED-YNAGRAVVGT 180

Query: 216 GAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELP 275
           G Y    +V  +R   +RNP Y+  K  +  KV Y  I N  A     L+G++ + +++ 
Sbjct: 181 GPYKFVSYVPGDRTVFERNPGYYGPK-PLWEKVNYRFINNGAARTAALLAGDVDVIDKVA 239

Query: 276 LEHFKRLKKEHPESVQVQGQL------CTYYYGFNN----------KKPPFDDVRVRKAL 319
           +   ++L+K+   SV     L       T+  G N           +K P  DVRVR+AL
Sbjct: 240 VTDVEKLRKDPKVSVYTYPGLRVLLLQPTFKAGPNEFITDNAGKPLEKNPLLDVRVRQAL 299

Query: 320 SYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGY 379
           S AI+R  + D +L      A    P+ + G++P++       +     +AKKLL EAG+
Sbjct: 300 SLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDVKDIAYNAE-----QAKKLLAEAGF 354

Query: 380 NKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTR 439
            +   +   +  +      +   A+   W + +GV   +E   W  Y     +  + V+ 
Sbjct: 355 PQGFQIAIHVPGDRYPQAPETVQAVAQFW-SRIGVKTKVEVVPWAVYSGRANKNEYAVSV 413

Query: 440 AGWCGDYNEASSFLTLMLSS-------NTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLY 492
             W     EA   L   L++        ++N  +Y +   D  ++ A      + R+ ++
Sbjct: 414 IAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNESVDKALDAATVEFDAKRREAIF 473

Query: 493 ADAEKLLARDMPIAPIYQY 511
             A KL+  D+   P+Y Y
Sbjct: 474 RHAAKLVTDDVGQIPLYHY 492