Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  596 bits (1536), Expect = e-175
 Identities = 293/539 (54%), Positives = 377/539 (69%), Gaps = 2/539 (0%)

Query: 4   NKITQALLLGAGLAVATTSFTSF-AANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVP 62
           + IT+  L+ AG+  A  + ++  AA+VPAG +LA  Q LVR NG+EV SLDPHK EGVP
Sbjct: 2   SNITKKSLIAAGILTALIAASAATAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVP 61

Query: 63  ESNVIRDLLEGLVNQDANGNVVPGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHDFVY 122
           ESNV RDL EGL+  D  G+  PGVAE WE  D K +TFH+R++AKWS+G PVTAHDFVY
Sbjct: 62  ESNVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRENAKWSDGTPVTAHDFVY 121

Query: 123 SFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYF 182
           S+QR  DP TASPY+ Y++Y  + N  +IIAG+K  + LG KA+DDHT    L   VPYF
Sbjct: 122 SWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPYF 181

Query: 183 VMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKN 242
             ++ H +V P+ K+ VEKFGD+WT+P N V NGAY L  WVVNER+ L+RNPQYWD+  
Sbjct: 182 YKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAK 241

Query: 243 TVLNKVTYLPIENQVAEMNRFLSGEIQIT-NELPLEHFKRLKKEHPESVQVQGQLCTYYY 301
           TV+N+VTYLPI ++V ++NR+ SGEI +T N +P+E F++LKKE P  V+V   LCTYYY
Sbjct: 242 TVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYY 301

Query: 302 GFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKM 361
             NN+K PF+DVRVR AL  A+DRD++ + +  QG  PAY  TP  T G     P + K 
Sbjct: 302 EINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKW 361

Query: 362 TQKERIAEAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQ 421
           +Q++R  EAKKLL EAG+    PL F LLYNTS+ HKK+A A+ S+WK +LGV++ LENQ
Sbjct: 362 SQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQ 421

Query: 422 EWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQYHSAEYDAVIEKAKT 481
           EWKT+LDTR QG FDV RAGWC DYNE +SFL  MLS +++N   Y S  +D +I     
Sbjct: 422 EWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLK 481

Query: 482 STSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDLYI 540
              + +R +LYA AE+ L +D  I P+Y YV +RLV P VGGY   +  D IY K+LYI
Sbjct: 482 VADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYI 540