Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  442 bits (1136), Expect = e-128
 Identities = 224/518 (43%), Positives = 322/518 (62%), Gaps = 3/518 (0%)

Query: 26  FAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVVP 85
           +AA+VPA T LAP Q     N ++  +LDP K E    + ++ DL EGLV  D  G V P
Sbjct: 19  YAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQP 78

Query: 86  GVAESWETTDN-KTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTK 144
             AE WE  D  K + FH+R   +WS+G P+TA DFV  +QRAVDP TASP++ Y+    
Sbjct: 79  AQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAH 138

Query: 145 MKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGD 204
           + NA  I+AG+ D ++LG KA DD TL   LE  VP+F  M+   T+ P+    + K GD
Sbjct: 139 INNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGD 198

Query: 205 QWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFL 264
            W+KPEN V NGA+VLD+WVVNE++  ++NP+Y D ++TVL +V YL ++N V   NR+ 
Sbjct: 199 SWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQQVEYLALDNSVTGYNRYR 258

Query: 265 SGEIQITNELPLEHFKRLKKEHPESVQVQGQLCTYYYGFNNKKPPFDDVRVRKALSYAID 324
           +GE+ +T  +P +    ++K  P  +++  +L + YY FN +KPPF+DVRVR+AL   +D
Sbjct: 259 AGEVDLT-WVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVD 317

Query: 325 RDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGYNKSNP 384
           R +++  +LG  + PA  LTP    GFS       +    ER+A AK LL++AGY+ S+P
Sbjct: 318 RQLIAQKVLGL-RTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHP 376

Query: 385 LKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCG 444
           L+F L YN  + H+K A A+ S WK  LG  + L   EWKTYLD RR G+F ++R  W  
Sbjct: 377 LRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDA 436

Query: 445 DYNEASSFLTLMLSSNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMP 504
            YN+ASSFL  + S +  N   + +A+YDA++ +A   T   +R  LY  AE ++ +  P
Sbjct: 437 TYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKRNALYQQAEVIINQQAP 496

Query: 505 IAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDLYIKA 542
           + PIY     +L+ P VGG+P +N +D +Y+K+LYIKA
Sbjct: 497 LIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKA 534