Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., putative transport periplasmic protein (VIMSS) from Escherichia coli BW25113

 Score =  538 bits (1386), Expect = e-157
 Identities = 266/516 (51%), Positives = 350/516 (67%), Gaps = 1/516 (0%)

Query: 25  SFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVV 84
           S+AA VP+GT LA  QELVR    E ASLDP K  G+PE  VIRDL EGLVNQ+  G +V
Sbjct: 20  SYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIV 79

Query: 85  PGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTK 144
           PGVA  W++ DN+ +TF +R +AKW++G PVTA DFVYS+QR VDP T SP++W+     
Sbjct: 80  PGVATQWKSNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAG 139

Query: 145 MKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGD 204
           + NA+ II G+     LG  AVD HTL  +L+  +P+FV +  +    P+ KA VE  G 
Sbjct: 140 INNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVES-GK 198

Query: 205 QWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFL 264
           +WTKP N +GNGAYVL + VVNE+L +  N  YWD+  TVL KVT+LPI  + A   R+L
Sbjct: 199 EWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYL 258

Query: 265 SGEIQITNELPLEHFKRLKKEHPESVQVQGQLCTYYYGFNNKKPPFDDVRVRKALSYAID 324
           +G+I IT   P   +++L K+ P  V    QL TYYY FN +K P  D RVR ALS  ID
Sbjct: 259 AGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTID 318

Query: 325 RDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGYNKSNP 384
           R ++++ +LG G+KPA+  TP++TAGF+PE   + +M+Q+E  A+AK LL  AGY    P
Sbjct: 319 RRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKP 378

Query: 385 LKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCG 444
           LK TLLYNTSENH+KIA A+ SMWK +LGVD+ L+NQEWKTY+D+R  GNFDV RA W G
Sbjct: 379 LKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVG 438

Query: 445 DYNEASSFLTLMLSSNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMP 504
           DYNE S+FLTL+ S+++ N  ++++  YD V+ +A T  + + R   Y  AEK+L    P
Sbjct: 439 DYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAP 498

Query: 505 IAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDLYI 540
           IAPIYQY   RL+ P + GYP NN ED  Y++ +YI
Sbjct: 499 IAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYI 534