Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., oligopeptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  581 bits (1497), Expect = e-170
 Identities = 283/537 (52%), Positives = 369/537 (68%), Gaps = 2/537 (0%)

Query: 6   ITQALLLGAG-LAVATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPES 64
           IT+  L+ AG LA       + AA+VPAG  LA  Q LVR NG+EV SLDPHK EGVPES
Sbjct: 4   ITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPES 63

Query: 65  NVIRDLLEGLVNQDANGNVVPGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHDFVYSF 124
           N+ RDL EGL+  D +G+  PGVAESW+  D K +TFH+RKDAKWS+G PVTA DFVYS+
Sbjct: 64  NISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQDFVYSW 123

Query: 125 QRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVM 184
           QR+VDP TASPY+ Y++Y  +    EI+ G+K  + LG KA+DDHTL   L   VPYF  
Sbjct: 124 QRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPYFYK 183

Query: 185 MMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTV 244
           ++ H +  P+ KA +EKFG++WT+P N V NGAY L  WVVNER+ L+R+P YW++  TV
Sbjct: 184 LLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNAKTV 243

Query: 245 LNKVTYLPIENQVAEMNRFLSGEIQIT-NELPLEHFKRLKKEHPESVQVQGQLCTYYYGF 303
           +N+VTYLPI ++V ++NR+ SGEI +T N +P+E F++LKKE P+ V V   LCTYYY  
Sbjct: 244 INQVTYLPIASEVTDVNRYRSGEIDMTNNSMPIELFQKLKKEIPDEVHVDPYLCTYYYEI 303

Query: 304 NNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQ 363
           NN+KPPF+DVRVR AL   +DRD++ + +  QG  PAY  TP  T G     P +   +Q
Sbjct: 304 NNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPEWFGWSQ 363

Query: 364 KERIAEAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEW 423
           ++R  EAKKLL EAGY    PL   LLYNTS+ HKK+A A  S+WK ++GV++ L NQEW
Sbjct: 364 EKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEW 423

Query: 424 KTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQYHSAEYDAVIEKAKTST 483
           KT+LDTR QG FDV RAGWC DYNE +SFL  MLS+++ N   Y S  +D+++ +    T
Sbjct: 424 KTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVT 483

Query: 484 SEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDLYI 540
            E +R  LY  AE+ L +D  I P+Y YV +RLV P VGGY   +  D  Y +++YI
Sbjct: 484 DEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYI 540