Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  145 bits (365), Expect = 5e-39
 Identities = 130/489 (26%), Positives = 218/489 (44%), Gaps = 42/489 (8%)

Query: 45  GNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVVPGVAESWE-TTDNKTFTFHI 103
           G G +   LDPH         V   L + LV+ D N   VPG+A+ W  + D KT T ++
Sbjct: 32  GLGADPDMLDPHLARTYYGRFVFASLCDRLVDVDENLKAVPGLAKDWAWSEDGKTLTLNL 91

Query: 104 RKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGA 163
           R+   + +G+   A    Y+  RA+    +      +  +++ + + +      +  L  
Sbjct: 92  REGVTFHDGEKFDAAAAKYNLDRALTLKGS------LRKSEISSVESVEVTGPMQIALHL 145

Query: 164 KAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKW 223
           K  D   L+   + A     MM      KP   A             + V +G Y  D  
Sbjct: 146 KTPDAALLMQLTDRAG---AMMAPEAAKKPDFAA-------------HPVCSGPYKFDSR 189

Query: 224 VVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEHFKRLK 283
           V  +R+ L R   YW+      +K+ YLPI +    +    +G++ +T  +     K ++
Sbjct: 190 VSQDRIVLTRFDNYWNKDAYHFDKIIYLPIPDASVRLANLRAGDLDLTEGIAASDVKTVE 249

Query: 284 KEHPESV-QVQG---QLCTYYYGFNNKKP---PFDDVRVRKALSYAIDRDVVSDAILGQG 336
            +   ++ +V G   Q  T+    N K P   PF D RVR+A S AIDRD ++  +    
Sbjct: 250 ADSKLALAKVTGLGYQGITFNIN-NGKVPANDPFKDARVREAFSQAIDRDALNQVVFEGL 308

Query: 337 QKPAYFLTPEITAGFSPEMPAYGKMTQKER-IAEAKKLLEEAGYNKSNPLKFTLLYNTSE 395
             PA          FSP  P +  +    R + +AK LL+ AG   + PL   LL   + 
Sbjct: 309 YTPA-------NQAFSPVSPYHVNLPVPPRDVDKAKALLKAAGV--TAPLTVNLLVPNNP 359

Query: 396 NHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTL 455
             +++   +Q+M     G ++ L+  E+ T LD ++ G++ ++ +GW G  +   S    
Sbjct: 360 TSQQVGQVLQAM-VAEAGFNLNLQMTEFATLLDRQQSGDYQLSFSGWSGRPDPDGSIYGF 418

Query: 456 MLSSNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSR 515
           + S  T ND +Y +A+ D  + +A+ ST ++ RQ LY    K L  DMPIA +Y   R  
Sbjct: 419 INSKGTLNDGRYSNAQVDEWLTQARQSTDQDARQPLYDKVVKQLQTDMPIAYLYFEPRIF 478

Query: 516 LVSPTVGGY 524
            ++ +V G+
Sbjct: 479 GLNKSVQGF 487