Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  130 bits (326), Expect = 2e-34
 Identities = 135/541 (24%), Positives = 222/541 (41%), Gaps = 47/541 (8%)

Query: 3   KNKITQALLLGAGLAVATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVP 62
           K+K+T   L  A L V++T           G+      +L   +GT V +        VP
Sbjct: 2   KSKLTTLALALAALTVSSTVAAKTLVYCSEGSPENFNPQLYT-SGTSVDA------SAVP 54

Query: 63  ESNVIRDLLEGLVNQDANGNVVPGVAESWETTDN-KTFTFHIRKDAKWSNGDPVT----- 116
             N + D   G         +VP +AE WE +D+ K +TFH+RK  K+ +    T     
Sbjct: 55  VYNRLVDFKPGTTE------LVPSLAERWEVSDDGKVYTFHLRKGVKFQSNKSFTPTRDF 108

Query: 117 -AHDFVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFEL 175
            A D ++SF R  D     PY   +      N + +  G       G   VDDHT+ F L
Sbjct: 109 NADDVIFSFMRQKD--VNHPYH-NVSNGSYSNFESLEFGSL---ITGIDKVDDHTVRFTL 162

Query: 176 ETAVPYFVMMMGH---TTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELK 232
                 FV  +     + +   +   + K G         +G G + L ++  + R+   
Sbjct: 163 AHPEAPFVADLAWYFASILSAEYADAMLKAGTPEKVDMEPIGTGPFKLAQYQKDSRILFT 222

Query: 233 RNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQV 292
               YW  K+  L+++ +    +      +    E Q+          R+K     ++  
Sbjct: 223 AFADYWQGKSK-LDRLVFSITPDASVRFAKIEKNECQVMPFPNPADLPRMKANKDINLMS 281

Query: 293 QGQLCTYYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFS 352
           +  L T +  FN +KPP D+V+VR+AL+ AI++  + DA+       A  L P    G  
Sbjct: 282 KAGLNTGFLAFNTQKPPLDNVKVRQALAMAINKPAIIDAVFHGTGTAAKNLLPPGVWGAD 341

Query: 353 PEMPAYGKMTQKERIAEAKKLLEEAGYNKSNPLKFTLL-----YNTSENHKKIATAIQSM 407
            E+  Y    +K     AK LL+EAG+     ++   +     YN   N K++A  IQ+ 
Sbjct: 342 SELKDYDYDPEK-----AKALLKEAGFANGVSVELWAMPVQRPYN--PNAKRMAEMIQAD 394

Query: 408 WKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSF----LTLMLSSNTSN 463
           W   +GV   +   EW  YL   + G       GW     +  +F     T   ++  SN
Sbjct: 395 W-AKIGVQTKIVTYEWGEYLKRVKGGEHQAALMGWTTATGDPDNFFGPLFTCTSANGGSN 453

Query: 464 DPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGG 523
             ++    +D +I +AK++T  ++R  LY +A++++   MP   I        V   V G
Sbjct: 454 SAKWCYKPFDKIIAEAKSTTDRDKRVALYKEAQQMMHDQMPAVMIAHSTIFEPVRKEVTG 513

Query: 524 Y 524
           Y
Sbjct: 514 Y 514