Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Escherichia coli ECRC62

 Score =  140 bits (354), Expect = 9e-38
 Identities = 130/526 (24%), Positives = 223/526 (42%), Gaps = 51/526 (9%)

Query: 27  AANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGN---- 82
           A N P      P   LV G   +  +LDP  T    +  V     + LV    +G+    
Sbjct: 17  ATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGST 76

Query: 83  -VVPGVAESWETTDN-KTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVD----PATASPY 136
            V   +A SW+ +D+ K +TF ++ +AK+++G PVTA     SF+R +     PA A P 
Sbjct: 77  DVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFP- 135

Query: 137 SWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHK 196
                              KD   L   A D+HT+ F L      F+  + +     I+ 
Sbjct: 136 -------------------KD---LKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINP 173

Query: 197 ATVEKFGDQWTK---PENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPI 253
           A +++      +    +N  G+G ++L  W   ++L L  NP Y  +K     +V+   I
Sbjct: 174 AVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPN-FKRVSVKII 232

Query: 254 ENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQVQGQLCTYYYGFNNKKPPFDDV 313
               +   +   G+I I + LP++    LK+E+  +V     L   Y   NN K P +  
Sbjct: 233 GESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQA 292

Query: 314 RVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKL 373
            +R+A+S++ D   + + IL    K      PE   G+      Y     K + AE  K+
Sbjct: 293 DLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAK-AEWDKV 351

Query: 374 LEEAGYNKSNPLKFTLLYNTSE-NHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQ 432
                   S P   T LY+ ++ N + IA A QS     LG+++ LE     T  D   +
Sbjct: 352 -------TSKPTSLTFLYSDNDPNWEPIALATQSS-LNKLGINVKLEKLANATMRDRVGK 403

Query: 433 GNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQ----YHSAEYDAVIEKAKTSTSEEER 488
           G++D+    W  D+ +   F+     S+    P     Y ++E D ++  A  +T + +R
Sbjct: 404 GDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQR 463

Query: 489 QKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIY 534
            + Y  A+K++  D     ++Q      ++  V G+  N   ++++
Sbjct: 464 TRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVF 509