Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Dickeya dianthicola ME23

 Score =  577 bits (1488), Expect = e-169
 Identities = 274/544 (50%), Positives = 380/544 (69%), Gaps = 4/544 (0%)

Query: 1   MYKNKITQALLLGAGLAV-ATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTE 59
           M  N I + L +    A+ A+   +++AA VPAG +LA  QELVR NG EV+SLDPHK E
Sbjct: 1   MVNNTIKKRLAVSIFAAITASAGVSAWAAKVPAGVQLAEKQELVRNNGAEVSSLDPHKIE 60

Query: 60  GVPESNVIRDLLEGLVNQDANGNVVPGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHD 119
           GVPESN+ RDLLEGL+    +G+  PGVAESW+  + K +TFH+RKDAKWSNG+PVTA D
Sbjct: 61  GVPESNIARDLLEGLLVTSPDGHPAPGVAESWDNKEFKVWTFHLRKDAKWSNGEPVTAQD 120

Query: 120 FVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAV 179
           FVYS+QR  DP TASPY+ Y+++  + N  +++AG+K    LG KA+DDHT    L   V
Sbjct: 121 FVYSWQRISDPKTASPYASYLQFGHIVNIDDVVAGKKSPDALGVKAIDDHTFEVTLSEPV 180

Query: 180 PYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWD 239
           PYF  ++ H +  P++K  VEKFGD+WT+P N+VGNGAY L++W+VNE++ L+RN  YWD
Sbjct: 181 PYFYKLLVHPSTFPVNKKVVEKFGDKWTQPANWVGNGAYKLNEWIVNEKIVLERNSNYWD 240

Query: 240 DKNTVLNKVTYLPIENQVAEMNRFLSGEIQIT-NELPLEHFKRLKKEHPESVQVQGQLCT 298
           + +T++NKVTYLPI ++V ++NR+ SGEI +T N LP+E F++LKKE P  V+    LCT
Sbjct: 241 NAHTIINKVTYLPISSEVTDVNRYRSGEIDMTYNNLPIELFQKLKKEIPNEVKADPYLCT 300

Query: 299 YYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEM--P 356
           YYY  NN+K PF+D RVR+AL   +D+D++++ +  QG  PA+  TP    G   ++  P
Sbjct: 301 YYYEINNQKAPFNDARVRQALVLGLDQDILTNKVKAQGDTPAFGFTPPYIDGLDGKLTPP 360

Query: 357 AYGKMTQKERIAEAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDI 416
            +   ++++R AEAKKLL EAG+    PL F LLYNTS+ HKK+A A  S+WK ++GV+ 
Sbjct: 361 EWVSWSREKRNAEAKKLLAEAGFTAEKPLTFNLLYNTSDLHKKLAIAASSIWKNNIGVEA 420

Query: 417 ALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQYHSAEYDAVI 476
            LENQEWKT+LD+R QG FDV RAGWC DYNE ++FL +M+++++SN   Y SA++D ++
Sbjct: 421 KLENQEWKTFLDSRHQGTFDVARAGWCADYNEPTTFLNIMIANSSSNTSHYKSADFDKLM 480

Query: 477 EKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAK 536
             A  + +EEER  +Y  AE LL +D  + P+Y Y  +RLV P VGG    +  D +  K
Sbjct: 481 TNALAAKTEEERANVYRQAETLLEKDAVVVPVYYYANTRLVKPYVGGITGKDPLDNLNVK 540

Query: 537 DLYI 540
           + YI
Sbjct: 541 NFYI 544