Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Periplasmic oligopeptide-binding protein from Azospirillum sp. SherDot2

 Score =  353 bits (905), Expect = e-101
 Identities = 199/530 (37%), Positives = 293/530 (55%), Gaps = 21/530 (3%)

Query: 5   KITQALLLGAGLAVATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPES 64
           K   A+++ AGLA+             AGT       L RGNG E ++LDPH+T+G  ES
Sbjct: 6   KKVSAVMVAAGLALF------------AGTAAQAATVLNRGNGGEPSTLDPHRTDGRIES 53

Query: 65  NVIRDLLEGLVNQDANGNVVPGVAESWETT-DNKTFTFHIRKDAKWSNGDPVTAHDFVYS 123
           N++RDL EGLV    +G ++PGVAESW+ + D K ++F +R DA+WSNGD VTA DFVYS
Sbjct: 54  NILRDLFEGLVVYGPDGRILPGVAESWQVSEDGKLYSFQLRADARWSNGDAVTAEDFVYS 113

Query: 124 FQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFV 183
            +RA+ P      S  M    +K A  +I G K   TLG  A +  T+   LE A PYF+
Sbjct: 114 LRRALTPKDGIQPSSNMRV--IKGAAAVIDGTKPADTLGVAAPNPRTVTIALEAATPYFL 171

Query: 184 -MMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKN 242
            ++    +  P+H+ TVE   ++WT P   V NGAYVL++W   +++ L RN  +     
Sbjct: 172 DLIAADNSALPVHRGTVESQRERWTDPGKMVSNGAYVLEEWRARQQIGLGRNANFHGRSG 231

Query: 243 TVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQVQGQLCTYYYG 302
             ++KV + PI++   E++RF +G + +T E+P +  K +    P+    +  L TYYY 
Sbjct: 232 VSIDKVNFFPIDDSAEEVDRFKAGTLHLTYEVPQDRVKWISLTEPKVFWNRPFLATYYYA 291

Query: 303 FNNKKPPFDDVR-VRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKM 361
           FN    PF   R +R+ALS A++R+ + D +   G+ PAY L P I   +  +   +   
Sbjct: 292 FNLTVEPFKSNRDLRRALSLAVNRENIVDKVTRAGETPAYGLVPPIVPNYRRQTADFIAE 351

Query: 362 TQKERIAEAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALE-- 419
               R+ EA++L   AG++   PL   +LYN SEN++ IA A+ SMW+ + G  I ++  
Sbjct: 352 PMDNRLREARRLFSTAGFSPMQPLAVEILYNQSENNRVIADAVISMWQDAFGKGIQVKPV 411

Query: 420 NQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSS--NTSNDPQYHSAEYDAVIE 477
           + E   YL  R + +F + RA W GDY + + FL LMLS+     NDP Y S +YD ++ 
Sbjct: 412 SVERTDYLKRRARRDFQIVRAAWIGDYADPTVFLNLMLSTALPPRNDPGYRSRKYDDLLA 471

Query: 478 KAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSN 527
           KA  S    +R  L   AEK +  D P+ PIY +    LVS  + G+  N
Sbjct: 472 KAAASEDAAQRSSLLGQAEKAMIDDDPVIPIYHFSTKSLVSQQIKGWVYN 521