Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  120 bits (301), Expect = 2e-31
 Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 9/249 (3%)

Query: 290 LQLGHFCAFYQPQKHIDSGGVVAFEALAR---RVIGKGLYEMPDRFFPILEKYHLIPTLT 346
           L  G F   +QP   + SG V A EAL R   R +G      PD+F P+ E+  LI  + 
Sbjct: 340 LSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRYLG---VVSPDQFVPLAEEIGLIRPIG 396

Query: 347 E-VMVRDILTFLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSV 405
           E ++       L+ +   L +I I VNI  +    G    ++    E+ +    L  L++
Sbjct: 397 EWLLTAACREALVWQGMGLGEINIAVNISPRQFQQGDIVGIIRRALEDTRLPPWL--LTI 454

Query: 406 EITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQS 465
           EITE  L+++ +    ++  +++LG+  ++DDFGTGYS   YL   P DV+KID  +I  
Sbjct: 455 EITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSSLSYLKSFPVDVLKIDRSFIAD 514

Query: 466 LGKAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQ 525
           +G       +++++I+   SL ++V+AE V++ QQ   +   GCD+ QGY  SP +S  +
Sbjct: 515 MGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFITAQGCDVAQGYYFSPPLSGPR 574

Query: 526 VLNYLHNKL 534
              ++  +L
Sbjct: 575 FREFVLERL 583