Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., Sensor histidine kinase RcsC from Pseudomonas sp. DMC3

 Score =  102 bits (255), Expect = 3e-26
 Identities = 106/409 (25%), Positives = 178/409 (43%), Gaps = 52/409 (12%)

Query: 42  FDSLMTTISDLVPGCQIALLERQSDEHWRIIQTSGLTVETRFKTAL--PPFIEDEWYCMP 99
           F + + +I D +P   IAL E+     W   Q +     TR   AL  P F+  E     
Sbjct: 285 FQNYLNSIIDSMPSALIALDEQLYVTQWN--QEASALSGTRLDEALNQPIFLAFEPLKPF 342

Query: 100 NVQAEMVWREHYAHCFPDCQSALAAKFHTAENHYLLLIMQPMLDGFNHSQRDELYALFDV 159
             Q +    +H        +      F   E  +  L   P++ G   + R  +  + D+
Sbjct: 343 LPQLKATVEQHTV-----AKVDRVTWFKDDEPKHYALTFYPLMGG---AGRGVVIRIDDI 394

Query: 160 TKSALYSMLQFRKTVIDKHQVQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVA 219
           T+      L   + ++      Q EK+ S+G LAAG+AHEINNPLG ++ N   +   ++
Sbjct: 395 TQR-----LSLEEMMV------QSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLS 443

Query: 220 -----QIRQHPQIQPIADPRLHEMIADSEAILMESLE--GLSRIKNIVSSLNVYSHTHEN 272
                 I    Q+    D     +       L++ ++  G    K +   L+    +   
Sbjct: 444 ADLPKNIETAEQLGIELDTVNRYLQGREVPQLLDGIQQAGARAAKIVTHMLSFSRRSTRQ 503

Query: 273 MAEIDMRDVLSSALALIIGDLKYRAQFVYPAPE-----KPYY--IRGSYNKLQQVFINLI 325
           MA  D+  ++  A+ +   D      F +          P    + G+ N+L+QV +NL+
Sbjct: 504 MAPCDLPALIDQAVEIAGNDFDLAIGFDFKGQAIIRQFDPALGPVPGTANELEQVLLNLL 563

Query: 326 INAVQSVSATQEG------VVRLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFDP 379
            NA Q++   ++       ++R  L          P  ++ +EDNG G+S    ++ F+P
Sbjct: 564 KNAAQAIHQREDDSEPGRIILRTRL--------NPPWAEIQVEDNGIGMSENVRKRTFEP 615

Query: 380 FFTTKKVGDGAGLGLSVAREIIEEHH-GKIKLCSTEGVGTRVFVTLPQA 427
           FFTTK++G G GLGLSV+  II  +H G++++ S  G GT   + LP A
Sbjct: 616 FFTTKEIGQGTGLGLSVSYFIITNNHKGQMEVQSAPGQGTCFTLRLPLA 664