Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  105 bits (261), Expect = 5e-27
 Identities = 70/268 (26%), Positives = 129/268 (48%), Gaps = 28/268 (10%)

Query: 164 LYSMLQFRKTVIDKHQVQ--QEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVAQI 221
           L  +++ R   + + Q++  Q  ++AS+G+LAAG+AHEIN P+ +V  N +F+      +
Sbjct: 359 LERLVEERTEALKQAQIEALQASRMASVGQLAAGIAHEINTPIQYVGDNLAFIQSAAEAV 418

Query: 222 ----------------------RQHPQIQPIADPRLHEMIADSEAILMESLEGLSRIKNI 259
                                 +    +Q      L  ++ ++   + +SLEG++++  I
Sbjct: 419 FPLLSEARALAESWRVGEGDAGKTEEFLQHYDAAGLDFLMEETLPAVTQSLEGVAQVARI 478

Query: 260 VSSLNVYSHTHENM-AEIDMRDVLSSALALIIGDLKYRAQFVYPAPEKPYYIRGSYNKLQ 318
           V S+  +SH   +    +D+   L S L +     K+ A+           +     ++ 
Sbjct: 479 VLSMKEFSHPGTSQKTAVDINRALDSTLVVCRNTWKHVARMETRFDPALPLVNCHPGEMN 538

Query: 319 QVFINLIINAVQSVSATQEGVVRLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFD 378
           QVF+NLI+NA  ++  + + +      E    G+     ++ I D+G GIS E  + +FD
Sbjct: 539 QVFLNLIVNAAHAIEESGKPLPGTITAETALCGDW---AEIRISDSGTGISDEIAQHIFD 595

Query: 379 PFFTTKKVGDGAGLGLSVAREIIEEHHG 406
           PFFTTK+VG G G GL++  +++   HG
Sbjct: 596 PFFTTKEVGKGTGQGLAICYDVVVNKHG 623