Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  113 bits (283), Expect = 2e-29
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 29/274 (10%)

Query: 177  KHQVQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYV--------------AQIR 222
            + +  Q  +LAS+G+LAAG+AHEIN P+ +V  N  F+++ +              +++ 
Sbjct: 742  QREALQASRLASVGQLAAGIAHEINTPIQYVGDNLRFISDSLIKLMSALTAARELGSEVG 801

Query: 223  QHPQIQPIA--------DPRLHEMIADSEAILMESLEGLSRIKNIVSSLNVYSHTHENMA 274
            Q P +   A          ++  ++A+  A L ESL+G+++I  IV S+  +SH   +  
Sbjct: 802  QIPALAEAAAKFEAAFRTTKIPFLVAEIPAALSESLDGVAQIARIVLSMKEFSHPGTSSK 861

Query: 275  EI-DMRDVLSSALALIIGDLKYRAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAVQSVS 333
             + D+   L S L +     K+ A+           +     +L QVF+NLI+NA  ++ 
Sbjct: 862  IMTDINRALDSTLTVSRNVWKHSAEVERNFDPTLPPVLCHAGELNQVFLNLIVNAAHAIE 921

Query: 334  ATQEGVV-RLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGL 392
            ++ + +  R+ +   R  G     V + + D+G G+     E++FDPFFTTK+VG G G 
Sbjct: 922  SSGKPLPGRITISTGRDGGH----VVITVADSGTGVPEAIRERIFDPFFTTKEVGKGTGQ 977

Query: 393  GLSVAREII-EEHHGKIKLCSTEGVGTRVFVTLP 425
            GL++ R+++  +H G + L    G G    V LP
Sbjct: 978  GLAICRDVVMTKHGGSLDLGDNAGDGAVFVVRLP 1011