Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  127 bits (318), Expect = 1e-33
 Identities = 108/432 (25%), Positives = 171/432 (39%), Gaps = 77/432 (17%)

Query: 5   RLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKR 64
           R L +EL+D     + +V  D   + VN     +   D   + G+      PE  DYL  
Sbjct: 176 RRLFAELVDHSVVNVHVVDKDLRWLAVNR----QARHDFHLLYGRT-----PEIGDYLPG 226

Query: 65  KIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLC 124
             +     ++     W++      F             +  L    +    G ++   L 
Sbjct: 227 LFEDGTAGQTPILPMWQRALAGEQFIEIGTFGKPPAVRHYELRFNALRDPKGEVQGAFLF 286

Query: 125 VYDVTIQASQQQELKRVSQKLEEEHQSQKVLIKKLEDAQGQLIQSEKMASIGQLSAGIAH 184
            YD++ +  +Q+ L +                     A+  L Q++KM ++GQLS GIAH
Sbjct: 287 AYDISERVQEQERLAK---------------------AEAALRQAQKMEAVGQLSGGIAH 325

Query: 185 EINNPVGFITSNLQTLSDYFNSLEKVLKSITQTIGQSKDTALNEACQKILKQGQVDFILE 244
           + NN +G I    + +               Q + QS+  AL                  
Sbjct: 326 DFNNLLGGILGAQELMR--------------QRLDQSRFDAL------------------ 353

Query: 245 DTAELITESLEGSSRVMSIVKNLKEFSHVDRSEWSYANLENCIESTLKIINNEIKYNITL 304
             A L+  S   + R  S+V  L  FS     +     +   +     ++   I   ITL
Sbjct: 354 --APLLELSSSAAQRASSLVHRLLAFSRQQTLQPCSTQVATLVAGMEDLLRRTIGPAITL 411

Query: 305 EKHYAANVPDVFCQPMQINQVLLNILVNASHAIKGEGTITI-------------TLQSAG 351
              +A+ +   F  P Q+   LLN+ +NA  A+   G I I              L+   
Sbjct: 412 SSRFASQLWPTFIDPPQLESALLNLCINARDAMPAGGVIEIIGDNLLLDDEQAVALELPA 471

Query: 352 DDFVEIHIRDTGCGIPEEIRERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGTISVTSE 411
            +FV + I D G G+  E+ ER  EPFFTTKP+G GTGLGLS++YG + +  G + V S 
Sbjct: 472 SEFVRLSIVDNGSGMSAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQLRVLSV 531

Query: 412 VGKGSEFTIRLP 423
            G+G+   + LP
Sbjct: 532 PGEGTRIELLLP 543



 Score = 25.4 bits (54), Expect = 0.006
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 32/148 (21%)

Query: 11  LLDQLSFALCIVR---------NDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADY 61
           L D +    CI+          +DYV V  N  +          + G+ + E+ P+ AD 
Sbjct: 41  LFDTMDEGFCIIEFFDGPHGPLSDYVHVLANAAYAKHAGIPN--VVGQKLREMVPDEADD 98

Query: 62  LKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQN--LEVIPIHSEDGTIE 119
              +    L                   ++  P+  E+E +     L V     E     
Sbjct: 99  WVARYGAVL-------------------RTGEPLHFEQELIATGHVLSVTTFRIEPAEKR 139

Query: 120 HVCLCVYDVTIQASQQQELKRVSQKLEE 147
            V +   DVT +   +Q L+R++++LE+
Sbjct: 140 QVAVLFKDVTERRRAEQALQRLNEELEQ 167