Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  206 bits (523), Expect = 2e-57
 Identities = 124/345 (35%), Positives = 205/345 (59%), Gaps = 16/345 (4%)

Query: 94  PVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQELKRVSQKLEEEHQSQK 153
           PV G++E++ + +  +P + +D           DVT +A  ++  ++   +L ++H   +
Sbjct: 302 PVDGKDEKIVR-ISGMPFYDQDSAFIGYRGIGADVTREARAEERARQAQLELADQHAQLE 360

Query: 154 VLIKK----LEDAQGQLIQSEKMASIGQLSAGIAHEINNPVGFITSNL---QTLSDYFNS 206
            L+++    L+ AQ + +Q+ +MAS+GQL+AGIAHEIN P+ ++  NL   Q+ ++    
Sbjct: 361 RLVEERTEALKQAQIEALQASRMASVGQLAAGIAHEINTPIQYVGDNLAFIQSAAEAVFP 420

Query: 207 LEKVLKSITQT--IGQSKDTALNEACQKILKQGQVDFILEDTAELITESLEGSSRVMSIV 264
           L    +++ ++  +G+       E  Q     G +DF++E+T   +T+SLEG ++V  IV
Sbjct: 421 LLSEARALAESWRVGEGDAGKTEEFLQHYDAAG-LDFLMEETLPAVTQSLEGVAQVARIV 479

Query: 265 KNLKEFSHVDRSEWSYANLENCIESTLKIINNEIKYNITLEKHYAANVPDVFCQPMQINQ 324
            ++KEFSH   S+ +  ++   ++STL +  N  K+   +E  +   +P V C P ++NQ
Sbjct: 480 LSMKEFSHPGTSQKTAVDINRALDSTLVVCRNTWKHVARMETRFDPALPLVNCHPGEMNQ 539

Query: 325 VLLNILVNASHAIKGEGTI---TITLQSA-GDDFVEIHIRDTGCGIPEEIRERIFEPFFT 380
           V LN++VNA+HAI+  G     TIT ++A   D+ EI I D+G GI +EI + IF+PFFT
Sbjct: 540 VFLNLIVNAAHAIEESGKPLPGTITAETALCGDWAEIRISDSGTGISDEIAQHIFDPFFT 599

Query: 381 TKPVGSGTGLGLSVSYG-IINKHNGTISVTSEVGKGSEFTIRLPV 424
           TK VG GTG GL++ Y  ++NKH G I V  E   G+ FTIR+PV
Sbjct: 600 TKEVGKGTGQGLAICYDVVVNKHGGQIVVGGEPEHGAIFTIRIPV 644