Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  118 bits (296), Expect = 6e-31
 Identities = 88/299 (29%), Positives = 132/299 (44%), Gaps = 57/299 (19%)

Query: 156 IKKLEDAQGQLIQSEKMASIGQLSAGIAHEINNPVGFITSNLQTLSDYFNSLEKVLKSIT 215
           I + +  +  L +S+KM ++GQL+ GIAH+ NN +G IT NL+ L       E  +K + 
Sbjct: 470 ITEQKQTEAALRRSQKMEAVGQLTGGIAHDFNNLLGIITGNLELLERTVQGSESGMKRV- 528

Query: 216 QTIGQSKDTALNEACQKILKQGQVDFILEDTAELITESLEGSSRVMSIVKNLKEFSHVDR 275
                   TAL  A                             R   + + L  FS  D 
Sbjct: 529 -------QTALRSA----------------------------RRGADLTRRLLSFSRQDP 553

Query: 276 SEW--SYANLENCIESTLKIINNEIKYNITLEKHYAANVPDVFCQPMQINQVLLNILVNA 333
                S  ++ + I    +++   +   I +    AA+         +    LLN+ +NA
Sbjct: 554 KAQGKSRTDIADAISGMQEMVQRSLTKVIEVRTQMAADTWHADINRSEFEDCLLNLCLNA 613

Query: 334 SHAIKGEGTITITLQSAGDD--------------FVEIHIRDTGCGIPEEIRERIFEPFF 379
             A+   G +T+   +   D              +V + + DTG GIP+EI +RIFEPFF
Sbjct: 614 RDAMPQGGVLTVEASNVEVDDEMRRADPNLTPGRYVVVSVSDTGTGIPKEIVDRIFEPFF 673

Query: 380 TTKPVGSGTGLGLSVSYGIINKHNGTISVTSEVGKGSEFTIRLPVNPSAEAVDNTDAKA 438
           TTK  G GTGLGL+++YG   +  G I V SE G G+ F + LP     +A D T+A A
Sbjct: 674 TTKERGKGTGLGLAMAYGFARRSGGHIRVYSEPGIGTTFRLYLP-----KAADGTEAAA 727