Pairwise Alignments

Query, 121 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 3    IRLTVADDSKMSRKSVIRAIPAGWDVEITEAQNGKEAVENYNNGLADVMFLDLTMPEMDG 62
            +R+ +A+D+  +++     +  G  VE+  A+NGK AV+       D++ +D+ MP MDG
Sbjct: 1005 LRVLLAEDNDFNQQVATELLADG-GVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVMDG 1063

Query: 63   IQVLEHFHRIDAKCL-VIVISADIQPLVQQRVRELGALNFLQKPLDPAQL 111
            +       R+    L VI ++A+     + R    G  ++L KP+DP +L
Sbjct: 1064 VAATREIRRLGFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDEL 1113



 Score = 29.6 bits (65), Expect = 1e-04
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 5   LTVADDSKMSRKSVIRAIPAGWDVEITEAQNGKEAVENYNNGLA----DVMFLDLTMPEM 60
           + V DD++ +R  ++  + +     +   ++G  AV            +V+FLD  MP M
Sbjct: 858 MLVVDDNENARAVLVDMLTS-MSFRVEAVESGAAAVARVREVAGAKPFEVVFLDWQMPGM 916

Query: 61  DGIQVLEHF--HRIDAKCLVIVISADIQPLVQQRVRELGALNFLQKPLDPA 109
           DGI+         + +   +I+++A  +  V +     G  + L KP++P+
Sbjct: 917 DGIETARAILGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVLIKPVNPS 967