Pairwise Alignments

Query, 276 a.a., CPBP family intramembrane metalloprotease from Vibrio cholerae E7946 ATCC 55056

Subject, 263 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  147 bits (372), Expect = 2e-40
 Identities = 99/256 (38%), Positives = 139/256 (54%), Gaps = 19/256 (7%)

Query: 37  LSALGSGYLTFVGAG------IICVGFALAYLAANGQSHWRTTAWVA---LLLWCLALFL 87
           L+ LG GY   +  G      +I VG  L    A  Q       W+     ++  +AL +
Sbjct: 9   LALLGLGYGLALSYGQLGWLALISVGLLLFAAFAVRQQEVPVARWLGHGLFIVLAVALAM 68

Query: 88  HWLPGFSNLKVLDKVIASAHSTPFSLYLNLDKPLVFFALLLAFPALLG-QSKTANIKATL 146
           HWLPGF+N +V++    + ++ PF++YLNLDKPLV F LLL  P ++  +S    + AT 
Sbjct: 69  HWLPGFANGRVINPQRFTDNAVPFAMYLNLDKPLVGFWLLLVCPWIVARRSLRLTVYATA 128

Query: 147 LTLVPLFALLPI--AVWLGALAFEWSLPEWWWIFALNNLLFTCVAEEALFRGLIQQKAQQ 204
           L L  L A+L +  A+ LG +A+    P+  W++ LNNLL   + EEALFRG +Q    +
Sbjct: 129 LALT-LCAILALGGALLLGVIAWAPKWPDQAWLWVLNNLLLVTLVEEALFRGYLQGGLSR 187

Query: 205 QF-----GAIAGLLIASALFGMAHFAGGPLLMIFAALAGLGYGLVFHFTGRLWVSVGVHF 259
           +F     G    LL AS LFG+ H   G   ++ A LAG+GYGL + F G L  ++  HF
Sbjct: 188 RFKHLPYGDNLALLSASLLFGLVHAGAGWTWVLLAGLAGVGYGLAYRF-GGLGAAIATHF 246

Query: 260 LFNFAHLLFFTYPMLA 275
             N  H   FTYPMLA
Sbjct: 247 GLNLLHFGLFTYPMLA 262



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 232 IFAALAGLGYGLVFHFTGRLW---VSVGVHFLFNFA 264
           ++ AL GLGYGL   +    W   +SVG+     FA
Sbjct: 7   LYLALLGLGYGLALSYGQLGWLALISVGLLLFAAFA 42