Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  403 bits (1036), Expect = e-116
 Identities = 266/702 (37%), Positives = 376/702 (53%), Gaps = 91/702 (12%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSYL LARK+RP  F E+VGQ HV+ ALENAL   RLHHAYLF+GTRGVGKTT+ R+ AK
Sbjct: 1   MSYLVLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAK 60

Query: 61  GLNCET-----GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKP 115
            LNC+      GITATPCG C  C++ID GRFVD  E+DAAS   V++ + LL+   YKP
Sbjct: 61  SLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKP 120

Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHL 175
            +GRFKV++IDEVHML+  +FNA+LKTLEEPPEY+KF+LATTDPQK+PVT+LSRCLQF+L
Sbjct: 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180

Query: 176 KPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSD 235
           +P++ E + + L  VL  E + ++ +AL LLA AA GSMRDALSLTDQAIA GNG +   
Sbjct: 181 RPMAPETVLEHLTGVLQTENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGNGELVET 240

Query: 236 IVAHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMY 295
            V  MLG++D  H   L++A++    + V++  E L  +G+     L++++  L  +A+ 
Sbjct: 241 GVRQMLGSVDRGHVFRLIEALAQGDGKTVVETSEALRVDGMSAASTLEEMTAVLQAMAVL 300

Query: 296 QALPATLDK----SLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEML 351
           QA+P+  +     + P+A+    LA  +   + QL Y + L GR +L L+P     + M+
Sbjct: 301 QAVPSRAESADAATDPDAADTARLAALMPADETQLLYSLCLHGRGELGLAPDEYAALTMV 360

Query: 352 MLRMMAFRPSHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAM 411
           +LR++AF+PS+ +          A TA T     ++ AAAAPQ            A    
Sbjct: 361 LLRLLAFKPSNAA----------ASTASTEKKTLNEAAAAAPQ------------APARA 398

Query: 412 PHPVAPPMMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQL- 470
           P PV  P    +P      P  Q  A+    AP +   T        S PA AG R  + 
Sbjct: 399 PAPVPAPAPVVRP------PAEQPAAAAPAPAPISPAPT--------SPPAPAGQRLAVV 444

Query: 471 -RSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEPEEEIYQW 529
              +RQ  Q               P  A  ++     +VQ  P   D    E  + +  +
Sbjct: 445 DEPRRQPEQR------------PEPPDAPAKVVGVPIRVQPPPSARDIPPAEGSQRV-PY 491

Query: 530 RPMQPIEVAVKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLETAKMVEQ 589
            P+   E       T TQL                    VA +A +AL +         +
Sbjct: 492 TPIPQSEDGDFWHATVTQL--------------------VASEAINALTR---------E 522

Query: 590 LALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNITVGQEGETPL 649
           LAL S  V + D     LR     L+   ++++L  ALN  LG    L I +G   ++P 
Sbjct: 523 LALQSQLVGR-DTDQWMLRIERETLNQPSSREKLTAALNG-LGHDIKLTIEIGGVVDSPA 580

Query: 650 ELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRP 691
               +   ++   A  ++  DP VQ + R F+A++   +++P
Sbjct: 581 RRNRQAADERQRVAEDAIHNDPEVQALMRDFDAKIVPGTLKP 622