Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., DNA polymerase III, gamma subunit from Pseudomonas putida KT2440

 Score =  513 bits (1322), Expect = e-150
 Identities = 315/696 (45%), Positives = 401/696 (57%), Gaps = 17/696 (2%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F E+VGQ+HVL AL NAL   RLHHAYLF+GTRGVGKTTI R+ AK
Sbjct: 1   MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
            LNCETGIT+TPCG C+ C+EID+GRFVDL+EIDAASRTKVEDTRELLDNVQY P+RGRF
Sbjct: 61  CLNCETGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLS HSFNALLKTLEEPP YVKF+LATTDPQKLP TILSRCLQF LK +S 
Sbjct: 121 KVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSP 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           E + + L  VL AE +  +  AL LL  AADGSMRDA+SLTDQAIA G G V +  V  M
Sbjct: 181 ERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LG+LD      +LQA+     +A+++ +  LA+ G +W G+L ++   LHR+A+ QALP 
Sbjct: 241 LGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEMLNVLHRVAIAQALPE 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
            +D    +  R+ +LA  L  +DVQ YYQ+ L GR+DLPL+P  R G EM++LRM+AFRP
Sbjct: 301 AVDNGQGDRERVLALASALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP 360

Query: 361 SHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAP--QPQPVAQSNVSQSASQAMPHPVAPP 418
           +    A   V   T ++  T A P  Q+AAAAP     PVA       A        AP 
Sbjct: 361 ADTDDAPKPVLKPTGISQAT-ADPAGQVAAAAPVALSPPVAAVPAEPVAQAPQLEVPAPA 419

Query: 419 MMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQEVQ 478
               +P  E+ V +     + S+  P A VV   D   +    A A L  +   +     
Sbjct: 420 TADHEPEAEADVELKAEAEAISVPEPVAEVV---DLPWEEPAVAPAPLAAEPAPEPAPAP 476

Query: 479 NKGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQPIEVA 538
              A    + A  A      +  A  A    V  ER+DE    P +E Y      P   +
Sbjct: 477 EPVAPVAPTQAAPAHDEPPFDPSAYAA----VGMERDDE---PPLDEDYYGGESDPAGFS 529

Query: 539 VKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLETAKMVEQLALNSAFV- 597
              E+     +   +    P   AK       Q  W  L  +L  + M   +A N   + 
Sbjct: 530 YLDELAEHVQEDVSKPAAEPLPAAKPATGLALQ--WLELFPQLPVSGMTGNIAANCTLIA 587

Query: 598 RQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNI-TVGQEGETPLELRERLY 656
             GD   L L P    L N   Q+ L +ALN  LG   +L I  +  E ETP +   R  
Sbjct: 588 ADGDDWLLHLDPGQGALFNATQQRRLNEALNQHLGRTLNLRIELILPEQETPAQAAARKR 647

Query: 657 QQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRPI 692
            ++   A+ S++ DP +Q + + F A++  D++ P+
Sbjct: 648 AERQQDAVASIEQDPLIQQMIKLFGAKVRQDTIEPV 683