Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 721 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Acinetobacter radioresistens SK82

 Score =  412 bits (1060), Expect = e-119
 Identities = 276/721 (38%), Positives = 386/721 (53%), Gaps = 43/721 (5%)

Query: 3   YLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGL 62
           Y  LARK+RP  F+E+VGQSHV  AL NAL + RLHHAYLF+GTRGVGKTTI R+ AK L
Sbjct: 2   YQVLARKYRPRNFNELVGQSHVSRALTNALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 63  NCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122
           NCETG+T+TPC  CATC+ +++GRF+DL+EIDAASRTKVEDTRELLDNV Y P +GRFKV
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVEN 182
           YLIDEVHMLS HSFNALLKTLEEPPE+VKFL ATTDPQKLP+T++SRCLQF L+P++V+ 
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181

Query: 183 IQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLG 242
           I + L ++L  E+I++DS A+  +  +A GS+RDALSLTDQAIA G G V    V  MLG
Sbjct: 182 ITEHLTRILQKEEINADSDAIWQIGESAQGSLRDALSLTDQAIAYGQGEVHHQDVKEMLG 241

Query: 243 TLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATL 302
            +D      L+ AI       V   +       ++   +L QL + LH +A+ Q LP   
Sbjct: 242 LIDRTIIYDLILAIHQNNQARVSQLLLQFRHQALDVSLVLDQLISTLHELALLQYLPDLG 301

Query: 303 DKSLPEASR-IESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP- 360
            K   E +R I  L++ ++ QD+QLYYQIA KGR DL LS T   G EM +LR++AFRP 
Sbjct: 302 LKYSDEINRKILQLSRLISAQDLQLYYQIACKGRADLQLSVTQEQGFEMCILRLLAFRPL 361

Query: 361 ----SHVSLASVIVPPNTAV------TAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQA 410
                 +  +   VP +++       TAP ++ P   + A   +P+    + +S+    A
Sbjct: 362 APDEISIDYSGQAVPDSSSSASAEVNTAPHLSEPQVTVLAEKFEPE---TNFISEELLLA 418

Query: 411 MPHPVAPPMMAA-------QPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPAL 463
              P   P   A       +  +E AVP +  E S + N   +  + + D          
Sbjct: 419 GAEPDTVPKTTADSSEPFEKKPLEPAVPDSNTEESSAANEMLSFNINSADGLVGFDE--- 475

Query: 464 AGLRHQLRSKRQEVQNKGADGKKSDAT--SATPASALERIAQRAQQVQVSPERNDED--- 518
           AGL  Q +              + D    S    S    I +   Q + +P  + ED   
Sbjct: 476 AGLNIQPKPVAPSADLLDTKFLEPDTAVISELAVSTQPDILKDLSQSETAPTISAEDLFV 535

Query: 519 ELEPEEEIYQWRPMQPIEVAVKSE-VTPTQLKKALEHEKTPEMGAKLIEEAV-------- 569
           EL   E        + +  +   E ++ T+L+KA    +  E    L+ + +        
Sbjct: 536 ELPVAESFKTGGKSEQVSHSFSDEKLSDTKLEKASISAQQYENSGHLMPQDILTLAPQQL 595

Query: 570 ----AQDAWSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQ 625
                 + W    +  E +  V++LA +       + +S+   P        + Q  LEQ
Sbjct: 596 EHDWTVEKWEYWFRNSELSPAVQELAQHGLMTGTINGLSVFQIPQQYEGMLSQLQHALEQ 655

Query: 626 ALNHVLGEACSLNITVGQEGETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLD 685
           A+     +          E  TP  ++    ++    A   LQ +P +Q +   F+A+L 
Sbjct: 656 AMKEQWPDTQFQVEYKEIEQITPYIMQTVRKEKAYQRAKELLQQEPAIQSLIHLFDAELQ 715

Query: 686 S 686
           +
Sbjct: 716 N 716