Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., multifunctional fatty acid oxidation complex subunit alpha from Pseudomonas simiae WCS417

 Score =  407 bits (1046), Expect = e-118
 Identities = 252/705 (35%), Positives = 390/705 (55%), Gaps = 26/705 (3%)

Query: 19  LAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEAC 78
           L  D+ GE +N        E++    T+      +KG+I+ S K D FI GAD+      
Sbjct: 20  LKFDLKGESVNKFNRLTLNELRQAVDTIKAD-ASVKGVIVSSGK-DVFIVGADITEFVDN 77

Query: 79  QSVHEAQALAS--QGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVTR 136
             + +A+ +A   +  ++F    DL  P VAAI+G  LGGGLE+ LA D+RV +     +
Sbjct: 78  FKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMSA--TAK 135

Query: 137 LGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVVDACVPHSVLL 196
           +GLPEV LG+ PG GGT RLPRLIG   A++ I  GK+ +A+ A K+G VDA V    L 
Sbjct: 136 IGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENKAEDALKVGAVDAVVAPDKLA 195

Query: 197 DVAKRLLE-----EKGHKKRAQVTLPIKEKLLANTDLGRKLIFDQAAKKTQQKTRGNYPA 251
           + A  L++     E  +K + Q   P  EKL  N  + + + F+ A      +   NYPA
Sbjct: 196 EAALNLIKGAISGEFDYKAKRQ---PKLEKLKLNA-IEQMMSFETAKGFVAGQAGPNYPA 251

Query: 252 AQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKKDLGA-DAKP 310
               ++ IQ     G    LE EA  F +L  T  +++L  +F    E+KK   A D   
Sbjct: 252 PVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQELKKKAKAYDEIA 311

Query: 311 APVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLFDKQRQRKIL 370
             V    VLG G+MG GI++ + +K  T + +KD+   G+   L    KL   +  +  +
Sbjct: 312 KDVKQAAVLGAGIMGGGIAYQSASKG-TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRM 370

Query: 371 TKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKPTTIFATNTS 430
           T A++   ++ +     +  F   D+V+EAV E+ K+KQ ++A++EA  K  TI A+NTS
Sbjct: 371 TAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVKDDTILASNTS 430

Query: 431 SLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTLARKQGKTPI 490
           ++ I  +A   +RP+N VG+H+F+PV  MPLVEVI    +S+  +AT V  A+K GK PI
Sbjct: 431 TISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVAYAKKMGKNPI 490

Query: 491 VVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLLDEVGVDIGA 550
           VV DC GF VNR+L PY    A+++ AG    ++D  +  FG+P+GP  L+D VG+D G 
Sbjct: 491 VVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGH 550

Query: 551 KIMPILVKELGPRFQGP--DVFDVLLKDNRKGRKSGKGFYTY----KGSKKKEVDKSVYK 604
               ++ +    R +       D L +  R G+K+GKGFY Y    KG +KK  D SV++
Sbjct: 551 HGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKVADPSVHE 610

Query: 605 LLK--LTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLGG 662
           +L   +  + +++D++I    ++ +  E VRCL++GI+ +A + DMG ++GIGFPPF GG
Sbjct: 611 VLAPVIYEQREVSDEDIINWMMIALCLETVRCLEDGIVETAAEADMGLVYGIGFPPFRGG 670

Query: 663 PFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707
             RY+D++G+ + V + +++ +  G  + P   L   A  G+ F+
Sbjct: 671 ALRYIDSIGVAEFVALADKYAD-LGPLYHPTAKLREMAKNGQSFF 714