Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., Fatty acid oxidation complex subunit alpha from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  786 bits (2030), Expect = 0.0
 Identities = 402/711 (56%), Positives = 531/711 (74%), Gaps = 9/711 (1%)

Query: 1   MDNNNAFQLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHS 60
           M+  +AF L+    + A + IDVP EKMNTL+A FA +++A+   L E + +++G++  S
Sbjct: 1   MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENK-ELRGVVFIS 59

Query: 61  LKPDNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLEL 120
            KPDNFIAGAD+ M+  C++  EA+ALA QGQQ+  ++  LP PV+AAIHG CLGGGLEL
Sbjct: 60  AKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLEL 119

Query: 121 ALACDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKA 180
           ALAC  RVCT+D  T LGLPEV LGLLPGSGGTQRLPRLIG+  AL++ILTGKQLRAK+A
Sbjct: 120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179

Query: 181 KKLGVVDACVPHSVLLDVAKRLLEEKGHKKRAQVTLPIKEKLLANTDLGRKLIFDQAAKK 240
            KLG+VD  VPHS+LL+ A  L ++     R    LP++E++LA   LGR L+F    KK
Sbjct: 180 LKLGLVDDVVPHSILLEAAVELAKKDRPSSRP---LPVRERILAGP-LGRALLFKMVGKK 235

Query: 241 TQQKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEM 300
           T+ KT+GNYPA + ILEV++ GL +G  +G + EA+ F EL MT +S+ALRSIFFA+T++
Sbjct: 236 TEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDV 295

Query: 301 KKDLGADAKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKL 360
           KKD G+DA PAP+ +VG+LGGGLMGAGI++VT  KA   VRIKD+   G+ +AL Y++  
Sbjct: 296 KKDPGSDAPPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQ 355

Query: 361 FDKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAK 420
            + + +R+ L  ++   Q++ +SG T + GF   D++IEAVFE+L+LKQQMVA++E N  
Sbjct: 356 LEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCA 415

Query: 421 PTTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVT 480
             TIFA+NTSSLPI  IA+ A RP+ ++GLH+FSPVEKMPLVE+IPHA TS +TIAT V 
Sbjct: 416 AHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVK 475

Query: 481 LARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITL 540
           LA+KQGKTPIVV+D AGFYVNRILAPY+NEA ++L  GE +E +DAAL+ FGFPVGPI L
Sbjct: 476 LAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQL 535

Query: 541 LDEVGVDIGAKIMPILVKELGPRFQGP-DVFDVLLKDNRKGRKSGKGFYTY--KGSK-KK 596
           LDEVG+D G KI+P+L    G RF  P +V   +L D+RKGRK+G+GFY Y  KG K KK
Sbjct: 536 LDEVGIDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKK 595

Query: 597 EVDKSVYKLLKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGF 656
           +VD ++Y L+    + +L+  ++A RC++ MLNEAVRC+DE +IRS RDGD+GA+FGIGF
Sbjct: 596 QVDPAIYPLIGAQGQGRLSAPQVAERCVMLMLNEAVRCVDEQVIRSVRDGDIGAVFGIGF 655

Query: 657 PPFLGGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707
           PPFLGGPFRY+D+LG  +VV +M +   +YG RF PC+ L+     GE F+
Sbjct: 656 PPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARGESFW 706