Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 204 a.a., RNA polymerase sigma factor RpoE from Rhodanobacter sp000427505 FW510-R12

 Score = 58.9 bits (141), Expect = 6e-14
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 25/187 (13%)

Query: 15  RPVNNDMDR----------QRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAW 64
           R   N++DR          +R ++ LVR Y   +        +  +  ED+ QE+ +RAW
Sbjct: 7   RTGENELDRALVERVQQGDRRAFDLLVRKYQHKVIGLVSRYVRTHAECEDIAQESFIRAW 66

Query: 65  KSLDSLLDEKAAKAWL--ITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWL 122
           +++ S   + A   WL  I +   +N      ++    DID  + E     +  H +   
Sbjct: 67  RAIGSFRGDSAFYTWLYKIAVNTAKNHLVAMGRRPPSGDIDADEAEFMAGAERMHDSATP 126

Query: 123 QRQILKLDV-------------EYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRAR 169
           +R++++ ++             E R  + L+ V G S +EIA+ +     TV +R+FRAR
Sbjct: 127 ERELMRQEIEQSVFSTVQSLPEELRTAITLREVDGLSYDEIAEAMGCPIGTVRSRIFRAR 186

Query: 170 NQLKEMM 176
             + E +
Sbjct: 187 EAIDEKL 193