Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 200 a.a., sigma-70 family RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 52.0 bits (123), Expect = 7e-12
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 28  EALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRE 87
           E L+ A   DL R A   C      +D VQE+ L  ++ L +L    +  AW  +I+R E
Sbjct: 51  ERLLTACRPDLRRIAQSQCASSVDPDDAVQESLLLIYRRLGTLRTIASFPAWAFSIVRHE 110

Query: 88  NARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSG 147
              R  R     V + + D+      +       L   I  L  +YRE + L+    +S 
Sbjct: 111 -CHRLLRAMRGQVALPEPDHAIFVYVERPDLRSDLAAAIQSLPEKYREAIILRDFEEYSI 169

Query: 148 EEIADILSLNKNTVMTRLFRARNQLKEMM 176
            EIA  L L +  V +R+ R R  ++E +
Sbjct: 170 SEIAGQLMLTREAVKSRIHRGRQMVQEYL 198