Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., sigma-70 family RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 52.8 bits (125), Expect = 4e-12
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 24  QRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI 83
           QR Y   V   H  + R A +   D + AEDL Q+  +RAW+ L     E A   WL  +
Sbjct: 26  QRLYRLHVGRVHGAVCRLAGY---DHARAEDLTQDAFIRAWQKLPGFRHESAFGTWLYRL 82

Query: 84  LRRENARRFERKQFDLVDI--DDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQV 141
                      +  D V +  D+H  +   +     + E L+R I +L    R +L L  
Sbjct: 83  AVNVALMDIRARGADPVSMLDDEHLPDTGQTPFCAAEREELERAIARLPPRARAVLVLHD 142

Query: 142 VGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGS 179
           + G+  EEI   L +   T   +L RAR  L++++  S
Sbjct: 143 IEGWRHEEIGGELGMAIGTSKAQLHRARALLRKILGES 180