Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 194 a.a., sigma-70 family RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 7/161 (4%)

Query: 30  LVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENA 89
           L R+YH  L R+   L +   + E+++ +    AW+   S   +     WL+ I  R   
Sbjct: 30  LYRSYHGRLCRFLGRLTRRADVIEEVINDCFWIAWQKAGSFHGDSRVSTWLMGIAYRSGL 89

Query: 90  RRFERKQFDLVDIDDHDYEAKYS-----DDEHHQNEWLQRQILKLDVEYRELLFLQVVGG 144
           +    +Q+    ++D     + S     D++    +WL + + +L  + R ++ L    G
Sbjct: 90  KTL--RQYGDAPVEDDPRREERSAVHDLDEDRELRDWLSKGLDRLSADQRVVIELVYGVG 147

Query: 145 FSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHYPEQ 185
            S +E+A I+     TV  RLF AR +L+ ++      P Q
Sbjct: 148 HSLDEVAVIMQCPVGTVKARLFHARVKLRNVLPSLAGEPPQ 188