Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 197 a.a., ECF RNA polymerase sigma factor EcfG from Xanthobacter sp. DMC5

 Score = 56.2 bits (134), Expect = 4e-13
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 31  VRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR---E 87
           VRA+ R L R       +R+ A+DLVQET L+A  ++D        +AWL TILR     
Sbjct: 30  VRAFARSLTR-------NRTEADDLVQETLLKALSNMDKFDPGTNLRAWLFTILRNTYYT 82

Query: 88  NARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSG 147
             R+  R+   +  +   D     S +       L+  +  L  + RE L L    G S 
Sbjct: 83  EIRKRRRENDGMAALAQQDSNIGPSQEWSATLTSLKDALALLPDDQREALVLVGAAGLSY 142

Query: 148 EEIADILSLNKNTVMTRLFRARNQLKEMM 176
           EE A++      T+ +R+ RAR +L  +M
Sbjct: 143 EEAAEVCGCALGTIKSRVNRARAKLLVLM 171