Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., ECF RNA polymerase sigma factor SigR from Xanthobacter sp. DMC5

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 39  YRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR------RENARR- 91
           Y  A +L +D   A+D+VQ+  LRA+++        +A+AWL+ I+R      R+  RR 
Sbjct: 81  YTLARYLTRDADAAQDIVQDAYLRAYRAFADFKGG-SARAWLLAIVRNCHLTWRDLRRRE 139

Query: 92  FERKQFDLVDI----DDHDYEAKYSDDEHHQNEWLQRQ--------ILKLDVEYRELLFL 139
            +R+  D V      D  D      D E  +   L+R         +  L    RE+L L
Sbjct: 140 MQRRAPDAVAAEEGGDPEDAIDLLVDGETPETILLRRSQADRVRGTLELLPEPLREVLVL 199

Query: 140 QVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHYPE 184
           + +   S  EIAD+  +   TVM+RL RAR    ++ +     PE
Sbjct: 200 RELDELSYREIADVAGVPVGTVMSRLSRARRHFADLWERVAAGPE 244