Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas simiae WCS417

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 25  RKYEALVRAYHRDLYRY-AYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI 83
           R YE L+R Y R L+   + +L  DR  A+D+ QE  L+    L +   +   K WL +I
Sbjct: 34  RAYEELMRRYQRTLFNVCSRYLGNDRD-ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSI 92

Query: 84  LRRE-----NARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLF 138
              E        R +R+  D + +D  +  ++       +   L R ++ ++   RE+L 
Sbjct: 93  TYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPAPEEKGGLDRWLVYVNPIDREILV 152

Query: 139 LQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDG 178
           L+ V     +EIADI+ +  +    R  RA ++L+E   G
Sbjct: 153 LRFVAELEFQEIADIMHMGLSATKMRYKRALDKLREKFAG 192